Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tpet_0948 |
Symbol | |
ID | 5171173 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thermotoga petrophila RKU-1 |
Kingdom | Bacteria |
Replicon accession | NC_009486 |
Strand | + |
Start bp | 970947 |
End bp | 973979 |
Gene Length | 3033 bp |
Protein Length | 1010 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640563466 |
Product | glycoside hydrolase family protein |
Protein accession | YP_001244542 |
Protein GI | 148270082 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0383] Alpha-mannosidase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAAAGGCC GATTGTGGAG AATGCTCTCA GAGATTGTTC CGTATACTTT TCTGAGAAGA GAAAGAATAG AAAGCTGGGT TTTCTCCGAT GATGCTGTTG AGAAAACCGT GGATCCTCCC TTCGAATGGA ATTTCAACTC CGCTCCTGTT TGGTTCAGAA AGGGTCTGTC CCCCTTCTCT GTCGACGGGG GACAGAGGGC TTACCTGAAA CTCTGGTTCG GTGGGGAGAC CCTTGTTCTT GTGGATGGGA AACCTTACGG GGAAATCAAT GAGTACCACA GGATACTGAA CATCACACCA CTTGCTGATG GTAAACCACA TACAATAGAA GCTCAGGTGA TGCCAAGGAG TCTTTTTGGA AGACCGGAAA AGCCAGTATT CACGGAAGCT TTCTTCATCG TCGTCGATGA AGCGTTGATG AAGGTGGTGA AAACGCTCGA ACTCACCATA AAGACGGCGG AAGTTGTAGA AGACGAGTCG CTTTCTAAGA AACTGCTGGA TATCTCCGAA GAGTTTCTCT CGAAAGTCTG GGTTCCACGA GACACAGATA CCTATCTGAT GACGGCACCG GAAGATCCGG GAATAAAAGA TGAGATCAAG AACACTTGGA GCACACCAGA GTTCAAAGAG TTCACAGGTG TGAAGCTTCC TGAAGAGTTG AGAAACCAGA TTCTGAAAGA GTTCGAAAAA TTCAAAGAGA AGCTGGACAA AATAAAGAAA GACCACCCGG GTTCTGGGAC GATCCGCCTT GTCGGTCACG CACACATAGA CTATGCCTGG CTTTGGCCCG TGGAGGAGAC GAGACGGAAG ATCCTTCGCA CCTTCGCAAA CTCCGTGTTG CTCTCTAAGC TCTATCCAGA GTTCGTTTAC ACCCAGTCTT CTGCTCAAAT GTACGAGGAT CTCAAACAAA ATTCACCGGA ACTCTTCGGG GAAGTGAAAA AGCTCGTAGA AGAGGGTAGA TGGGAACCAG TCGGTGGCAT GTGGGTGGAG TCGGACTGCA ACATCCCATC GATAGAGTCC CTTGTGAGGC AGTTCTACTA CGGTCAAAAG TTTTTCGAAA GAGAATTCGG GAGAAAGAGC AGAGTATGCT GGCTACCGGA TGTGTTCGGT TTCTCCTGGG TACTTCCTCA GATTCTGAGA GACGTGGGAA TAGAGTACTT TGTCACTACG AAACTCAACT GGAACGACAC GAACGAGTTT CCATACGATC TGTGTCGTTG GAGGGGAATA GATGGATCCG AAGTTATCTA TTTCAGCTTC AAAAATCCCA ACGAGGGATA CAACGGGAGG ATAGATCCCG ATACGATCTA CAGGACCTGG AAGAATTTCA AGCAAAAAGA TCTCACAAAC AGAGTTCTTC TTTCGTTCGG ACATGGTGAT GGCGGTGGCG GCCCAACCGA AGAGATGCTG GAAAATTACG AAGTTCTGAA GGATTTTCCT GGACTGCCGC GCCTTGAAAT GGGAACTGTG GAAGAATTTT TCGAGAAAAT GAAGATCGAC GGAGAACTTC CTGTGTGGGA CGGAGAGCTT TACCTTGAAC TTCACAGGGG AACCTACACT TCTCAGTCCA AGACAAAGAA ACTTCACAAA GAAGCGGAAG ACAGCCTTTA TCTTGCAGAG TTGATCTCGG CTTTCACGGA TAAGGATTTT TCAGACGAAA TAGACGAACT CTGGAAAATT CTACTGAGAA ACGAATTTCA CGATATTCTG CCTGGATCTT CTATAAAGGA AGTCTATGAA GATACAGAAA AAGAACTCAG ACAGGTGATA GAAAAATCAA AAGGCATCAT TGTCGAATCT CTCAAAGTTC TTTCTTCTGA GAACGAAGAG GTTTTAACCC TTTTGAACGT TTCTTCGTTT CCAAAGAAGT GTCTTTTCTT CCTCAACGAA GATCTTGAGA TCTTCCTCGA AGGAGAAGCG CTCTTGAAAC AGAAAACCCA CGATGGAAGG TATGTGTACT TCATAGACAG AGAAATTCCA CCGTTCACGA AAGTGGAACT GAAGGTTCGC AAAGCCACGT CTGAGGAAAC TCCAAATGAG TTGAGAGAAG CGAACATCAT GGAGAACGAG TTTCTCAGGG TGTACGTCAA CGATGACGGA ACGGTTCAGA TCTACGATAA GGAACTGGAT AGGTACGTTT TCGAAGAAAA GGGAAACGTC TTGAAACTCC ACAAAAACAT TCCCACTTAC TGGGACAACT GGGATATCGC AGAAAACGTA GAAAAGACAG GATATACCCT GAGTGCGAAA AACATAGAAA AAATAGAATC TGGTCCTGTT CGGGAGGTGA TCCGCGTCGA ATACGAGGCG GAAGGAAGCA AGATTATACA GCATTACATC CTCTACAGGA AAAGCAGAAG GCTCGATATA GAAACGAAGG CAGACTGGCA CACAAGACGT GCGCTTCTCA GGGCTTACTT CCCAACAACT GTTTTGTCGA GAAAGGCAAG GTTCGATATC TCCGGTGGTT TCATCGAAAG GCCCACGCAC AGAAACACCA GTTTCGAACA GGCGCGTTTC GAGGTGCCGT TTCACAGGTG GATGGATCTT TCCCAGACAG ATTTTGGTGT ATCCATCCTG AACGACGGAA AATACGGTGG CAGTGTTTAT CAAGACACCA TGGCACTTTC GCTGATAAAA GCGGGTATTT TCCCCGACTT TCTCTGTGAC GAAGGCGAAC ACAATTTCAC CTATTCTGTC TACGTACACC CCGGAGACAG CTTGAGAGAT GTTGTAAAAG AATCAGAAGA GCTCAACAAG TCTTTCATCG TTCATCATGG GATGTTGAAC CTTCCCTCTC CCTTACTGGA GATTTCTCCT CGAAATTTCC GTCTCACTTC ACTGAGAAGG GTGAAGGACA GAATTGTTCT GAGGCTTGTT GAGATCTTTG GAACATCAGG GAAACTTTCC ATTAAGACTC CGTGGAACGG TGAGATCTAC CAGACGAACC TTCTGGAAGA GAAGAAGCAA AAAGTAGCCT TCCCAATGGT TTACCATCCG TTCAAGATCT ACACCTTCGT TGTAGAAGAT TGA
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Protein sequence | MKGRLWRMLS EIVPYTFLRR ERIESWVFSD DAVEKTVDPP FEWNFNSAPV WFRKGLSPFS VDGGQRAYLK LWFGGETLVL VDGKPYGEIN EYHRILNITP LADGKPHTIE AQVMPRSLFG RPEKPVFTEA FFIVVDEALM KVVKTLELTI KTAEVVEDES LSKKLLDISE EFLSKVWVPR DTDTYLMTAP EDPGIKDEIK NTWSTPEFKE FTGVKLPEEL RNQILKEFEK FKEKLDKIKK DHPGSGTIRL VGHAHIDYAW LWPVEETRRK ILRTFANSVL LSKLYPEFVY TQSSAQMYED LKQNSPELFG EVKKLVEEGR WEPVGGMWVE SDCNIPSIES LVRQFYYGQK FFEREFGRKS RVCWLPDVFG FSWVLPQILR DVGIEYFVTT KLNWNDTNEF PYDLCRWRGI DGSEVIYFSF KNPNEGYNGR IDPDTIYRTW KNFKQKDLTN RVLLSFGHGD GGGGPTEEML ENYEVLKDFP GLPRLEMGTV EEFFEKMKID GELPVWDGEL YLELHRGTYT SQSKTKKLHK EAEDSLYLAE LISAFTDKDF SDEIDELWKI LLRNEFHDIL PGSSIKEVYE DTEKELRQVI EKSKGIIVES LKVLSSENEE VLTLLNVSSF PKKCLFFLNE DLEIFLEGEA LLKQKTHDGR YVYFIDREIP PFTKVELKVR KATSEETPNE LREANIMENE FLRVYVNDDG TVQIYDKELD RYVFEEKGNV LKLHKNIPTY WDNWDIAENV EKTGYTLSAK NIEKIESGPV REVIRVEYEA EGSKIIQHYI LYRKSRRLDI ETKADWHTRR ALLRAYFPTT VLSRKARFDI SGGFIERPTH RNTSFEQARF EVPFHRWMDL SQTDFGVSIL NDGKYGGSVY QDTMALSLIK AGIFPDFLCD EGEHNFTYSV YVHPGDSLRD VVKESEELNK SFIVHHGMLN LPSPLLEISP RNFRLTSLRR VKDRIVLRLV EIFGTSGKLS IKTPWNGEIY QTNLLEEKKQ KVAFPMVYHP FKIYTFVVED
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