| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_0556 |
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| Symbol | |
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| ID | 5171326 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermotoga petrophila RKU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009486 |
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| Strand | - |
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| Start bp | 555456 |
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| End bp | 556319 |
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| Gene Length | 864 bp |
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| Protein Length | 287 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640563063 |
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| Product | apurinic endonuclease Apn1 |
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| Protein accession | YP_001244153 |
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| Protein GI | 148269693 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0648] Endonuclease IV |
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| TIGRFAM ID | [TIGR00587] apurinic endonuclease (APN1) |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00064756 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATAAAAA TAGGAGCTCA CATGCCCATC TCGAAAGGAT TTGACAGGGT ACCACAAGAC
ACAGTGAACA TAGGGGGGAA TGCCTATCAG ATCTTTCCTC ACAACGCTCG CTCCTGGAGT
GCAAAACTTC CTTCTGACGA TATCACCACG AAATTCAAAC GGGAGATGAA AAAATACGGA
ATCGACTGGG AAAATGCGTT CTGTCACAGT GGATACCTCA TAAACCTCGC CAGTCCAAAA
GAGGACATCT GGCAGAAGTC CGTTGAACTT TTGAAAAAAG AAGTGGAAAT TTGCAGAAAG
CTGGGTATAA GGTATCTGAA TATTCACCCC GGCAGTCACC TCGGAGCTGG AGAGAAAGAA
GGAACAGAAA GAATAGTAAG AGGATTGAAC GAGGTGCTGA ATAGCACCGA AGATGTGGTG
ATTCTCCTTG AGAACGTCTC ACAAAAAGGA GGAAACATCG GTTACAAATT GGATCAGCTG
AAAAAGATCA GAGATCTCGT CGATCAAAAA GACCGTGTGG CCATCACTTA CGATACGTGT
CATGGATTCG ACTCTGGTTA CGACATCACA AAAAAGGAAG GGGTCGAGGC CCTACTGAAC
GAAATAGAGA CCCTGTTTGG CTTAGAAAGA CTCAAGATGA TTCACTTGAA CGATTCCAAA
TACCCGCTTG GAGCGGCAAA AGACAGACAC GAAAGAATAG GAAGCGGATT CATAGGTGAA
GAAGGCTTTG CAGTGTTTTT CTCCTTCAAA GAGATCCAGA AAGTTCCATG GATCCTTGAA
ACCCCTGGTG GAAACGAAGA GCACGCGGAG GATATAAAAA AGGTGTTTGA GATCATAGAA
AAGTTCGATA TAGAGGTCGA TTGA
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| Protein sequence | MIKIGAHMPI SKGFDRVPQD TVNIGGNAYQ IFPHNARSWS AKLPSDDITT KFKREMKKYG
IDWENAFCHS GYLINLASPK EDIWQKSVEL LKKEVEICRK LGIRYLNIHP GSHLGAGEKE
GTERIVRGLN EVLNSTEDVV ILLENVSQKG GNIGYKLDQL KKIRDLVDQK DRVAITYDTC
HGFDSGYDIT KKEGVEALLN EIETLFGLER LKMIHLNDSK YPLGAAKDRH ERIGSGFIGE
EGFAVFFSFK EIQKVPWILE TPGGNEEHAE DIKKVFEIIE KFDIEVD
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