| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_0207 |
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| Symbol | |
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| ID | 5171704 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermotoga petrophila RKU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009486 |
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| Strand | - |
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| Start bp | 201193 |
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| End bp | 203325 |
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| Gene Length | 2133 bp |
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| Protein Length | 710 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640562710 |
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| Product | ribonuclease R |
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| Protein accession | YP_001243812 |
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| Protein GI | 148269352 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTCCGA TAAGGAAGAA AGATGTGGAA AGGTTCATTC TCTCAGACGA TTACAAACCC
ATGGTGTTGA AAGAACTCTA CAAGAAATTC CGGGCAAAGA CAAGAGAAGA GAGAAGAAAA
GTGAGAGAAG TTGTGAAAAA GCTGGAAAAA GAGGGAAGGA TCTTCAGGGA CAGCAGGGGA
AGGTACAGAA AACTCGGCGA AGATCTCAAA GTAGGAACGA TCGAATTCAC ACGAAGTGGT
TACGTGGCCT TTGTCATAAC GGACGAGTTT GAAGAAATCG CTGTTCCTGT TGAAGACACG
AAGTACGCCA TGCACAAGGA CAGAGTCGTC GTTGAAATAG CAGGAACCTG GAGAGGGCTT
CCAAGGGGAC GAGTCGTAAA GGTTCTCGAA CGTGGCCTTA CGAGGGTAGT TGGTGTTTTT
GACCACAAAG GAACCTTTGG ATTTGTTGTG CCGGATGACC CGAAGATAGC GTACGATTTC
TACGTGGCAC CCGAGAACAT CGATGGTGCG AAACCTAACC AGAAGGTGAT AGCGGAGATC
CTGAAATATC CTTCTCCCGG CAAGAACCCT GAGGCGAAGG TTGTGAAAGT ACTCGGTGAT
CTCGATGACC CTTCCATCGA CCTTCCAAGT GTCATAGTGA AGCACGATCT TCCAGAACCG
GGTGAATTTC CAGAAGAGGT CATAAGAGAA GCGAACTCGA TACCTGCCAA GGTGAGGAAA
AAAGACCTTG TCGGAAGAAA AGATTTGAGA GATAAAGTCA TCGTCACGAT AGACGGTGAG
GACGCAAAGG ACTTCGACGA TGCCATCTCC GTGGAAAAGC TTTCGAACGG AAATTACCTT
CTCGGTGTTC ACATAGCGGA CGTTTCACAT TACGTGAAAG AAGGTTCCGC ACTGGACCAG
GAGGCCTTCA AGAGGGGAAC GAGTGTGTAC CTCATCGATA CCGTGATTCC AATGCTCCCC
TTCAGACTGT CCAACGGTAT CTGCAGTCTC GTTGAGGGGA AAGACAGACT CACCATGAGT
GTGGAGATGG AAATAGACAG AGACGGACGG GTCGTGAGAT ACGATGTCTA TCCGAGTGTG
ATAAAGAGCA AAAAAAGGAT GATCTACGAG AGGGTGAACG AATTCCTGGA AGATCCCTCT
TCTATGAAGG AGTACGAACC TTTCAAAGAT CTCATATACA ACGCGGTGGA ACTCGCAGAG
ATATTGAGAG AAGCACGGAG AAAGCGTGGA GCCATTCTCG ATATAGAGAG TGACGAAGTG
AAGGTCATAC TGGACGAAAA CGGTCAGGTG GTGGATATCG TTCCAAGAAA GAGAGGAATT
GCAGAGAAGT TGATAGAAGA ATTCATGATC AGAGCGAACG AGACGGTGGC TGAAATATTC
GATCACGCCG GACTTCCATT CATGTATCGT GTACACGAGG AACCCGATCC CGAGACCATT
TTTCAGTTGA GGAACTATCT TGAAGCGATG GGGATAAGAG CGAATTTTCC CCAGAATATC
CACCCGGGAA TGCTTCAGAA ACTTCTGGAA AAGGTCAAAG ACCATCCTTT GAGAAGCAGT
GTAGAAAGAC TCCTCGTCAG ATCCATGAAA AGGGCAATGT ACTCCGCCGT GAACATCGGT
CATTTCGGAC TTGCTTCTTA CGCTTACACG CATTTCACTT CACCCATAAG AAGATATCCC
GATCTTGTCG TTCATAGGCT TTTGAAACTC TACCTTGAGC AGAACGGATA CTTCACCCCC
GAACAGATCG AAAAATTCTC CAAGGTGCTT CCGAAGATCG CGAAACACTG CAGTCGAAGG
GAAAGAGTCG CGGACGAAGC GGAGTGGGAC CTTGTAGCTA TGAAGAAAGT AGAATACATA
GCCCGCCACA TAGGGGAGGT TTTTGACGTT GTGGTAACGA ACATCACCAA ATTTGGGCTG
TTCGTGGAGA TTCCTGAAAA GAGCATCTCC GGTCTTGTTC ACATATCGAC GCTGGACGAC
TACTATTACT ACGACGAAAC AAGGAACATG CTCATCGGGA AGCGAAAGGG AAGGGTCTTC
AGGCTGGGAG ATGTTCTCAA GGTAAAAGTG ATGAGGGCAG ACAAGATCAG GGGCGAGATA
GACTTCGTAC TGGTGGAGGA GGATGAAGAA TGA
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| Protein sequence | MSPIRKKDVE RFILSDDYKP MVLKELYKKF RAKTREERRK VREVVKKLEK EGRIFRDSRG
RYRKLGEDLK VGTIEFTRSG YVAFVITDEF EEIAVPVEDT KYAMHKDRVV VEIAGTWRGL
PRGRVVKVLE RGLTRVVGVF DHKGTFGFVV PDDPKIAYDF YVAPENIDGA KPNQKVIAEI
LKYPSPGKNP EAKVVKVLGD LDDPSIDLPS VIVKHDLPEP GEFPEEVIRE ANSIPAKVRK
KDLVGRKDLR DKVIVTIDGE DAKDFDDAIS VEKLSNGNYL LGVHIADVSH YVKEGSALDQ
EAFKRGTSVY LIDTVIPMLP FRLSNGICSL VEGKDRLTMS VEMEIDRDGR VVRYDVYPSV
IKSKKRMIYE RVNEFLEDPS SMKEYEPFKD LIYNAVELAE ILREARRKRG AILDIESDEV
KVILDENGQV VDIVPRKRGI AEKLIEEFMI RANETVAEIF DHAGLPFMYR VHEEPDPETI
FQLRNYLEAM GIRANFPQNI HPGMLQKLLE KVKDHPLRSS VERLLVRSMK RAMYSAVNIG
HFGLASYAYT HFTSPIRRYP DLVVHRLLKL YLEQNGYFTP EQIEKFSKVL PKIAKHCSRR
ERVADEAEWD LVAMKKVEYI ARHIGEVFDV VVTNITKFGL FVEIPEKSIS GLVHISTLDD
YYYYDETRNM LIGKRKGRVF RLGDVLKVKV MRADKIRGEI DFVLVEEDEE
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