Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tpet_0038 |
Symbol | |
ID | 5171559 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thermotoga petrophila RKU-1 |
Kingdom | Bacteria |
Replicon accession | NC_009486 |
Strand | - |
Start bp | 33380 |
End bp | 34510 |
Gene Length | 1131 bp |
Protein Length | 376 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640562536 |
Product | 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
Protein accession | YP_001243643 |
Protein GI | 148269183 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG0743] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
TIGRFAM ID | [TIGR00243] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.000153353 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAAGAAA GAACCCTCGT GATACTGGGT GCCACTGGAT CCATAGGAAC TCAGACACTC GATGTTTTGA AAAAAGTGAA GGGAATTCGA TTGATAGGCA TCTCGTTTCA CAGCAATCTG GAGCTGGCCT TCAAGATCGT GAAGGAATTC AACGTGAAAA ACGTGGCGGT CACGGGTGAT GTGGAGTTCG AAGACAGTTC GATCAACGTC TGGAAAGGTC CTCATTCCAT AGAAGAGATG CTGGAAGCGC TGAAGCCTGA CATCACAATG GTAGCAGTTT CGGGATTCAG TGGATTGAGG GCGGTGCTTT CGTCTCTGGA GCACTCGAAA AGGGTGTGCC TTGCAAACAA AGAATCTCTC GTGTGCGGCG GATTTCTGGT GAAGAAAAAA CTCAAAGAGA AAAGAACTGA ACTCATTCCG GTCGATAGTG AACACAGTGC CATCTTTCAG GTGATAGAAC CAGAAGTGGA AAAGGTGGTT TTGACAGCTT CTGGAGGTGC TTTGAGAGAC TGGGAGATTT CCAAGATCGA TAGAGCAAGA CCTGAAGACG TGCTCAGGCA TCCCGTGTGG AATATGGGAG CCCGTATAAC GGTAGATTCT GCAACAATGG TGAACAAGGC GTTCGAAGTT CTGGAAGCCA TGGAGCTCTT CGAGCTGCCC TTCGAGAAGA TAGAAGTGAA GATACACAGA GAGGGGCTGG TTCACGGAGC GGTGGTTTTG CCCGATGGAA ACGTCAAAAT GGTGGTATCA CCACCGGATA TGAGAATACC GATAAGTTAT GCTCTTTTCT ATCCGAGACG CGTCGCTCTT GAACCGTTTT TTCTGAGGAC CATCAGCCTT TCTTTTGAAG ATCCCGATCC CGAAAAATAC CCTGCGTTCT TTCTTCTGAA AGAGATAAAG GATTCTTACG CTCTGAGAAC AGCTTTCAAC GCGGCGGACG AAGTAGCGGT CGAAGCCTTT CTGAAAGGGA GAATAAGGTT CGGTGGTATC CACAGAGTGA TAGAGAAAAC TCTCGAAGAG TTTCAAGGAT ATCCACAACC GCGAACGCTG GATGATGTGG AGCGAATTCA TTTCGAAGCG ATAAAAAAAG CGGAGAGGGT GACAGAATGG TTATCGTCTA CTTCATATTG A
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Protein sequence | MEERTLVILG ATGSIGTQTL DVLKKVKGIR LIGISFHSNL ELAFKIVKEF NVKNVAVTGD VEFEDSSINV WKGPHSIEEM LEALKPDITM VAVSGFSGLR AVLSSLEHSK RVCLANKESL VCGGFLVKKK LKEKRTELIP VDSEHSAIFQ VIEPEVEKVV LTASGGALRD WEISKIDRAR PEDVLRHPVW NMGARITVDS ATMVNKAFEV LEAMELFELP FEKIEVKIHR EGLVHGAVVL PDGNVKMVVS PPDMRIPISY ALFYPRRVAL EPFFLRTISL SFEDPDPEKY PAFFLLKEIK DSYALRTAFN AADEVAVEAF LKGRIRFGGI HRVIEKTLEE FQGYPQPRTL DDVERIHFEA IKKAERVTEW LSSTSY
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