| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_0025 |
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| Symbol | |
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| ID | 5169939 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermotoga petrophila RKU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009486 |
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| Strand | + |
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| Start bp | 23828 |
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| End bp | 24472 |
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| Gene Length | 645 bp |
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| Protein Length | 214 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640562523 |
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| Product | RNA polymerase, sigma 28 subunit, FliA/WhiG |
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| Protein accession | YP_001243630 |
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| Protein GI | 148269170 |
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| COG category | [K] Transcription |
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| COG ID | [COG1191] DNA-directed RNA polymerase specialized sigma subunit |
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| TIGRFAM ID | [TIGR02479] RNA polymerase sigma factor, FliA/WhiG family
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000000417711 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGATAAGAA GCTTGCTTCC GTTTATAAAG AGAACAGCTG AGGATTTGGC ACAGACCCTA
CCTCCAAACG TGGAGGTAGA TGATCTGATT CAGGAAGGAA TCGTCGCAGC CCTGTCTTCT
CTGGAAAGAT ACGATCCATC AAAAGCGAGT TTCACAACGT TCATAATGAA AAGAGTGAAA
GGTGCCATGT ACGACTATTT GAGAAAAATA GACTGGATGC CGAGGAATCT GAGAAAAAAC
GTGAAGATGA TCGAAAGAGC GATATACGAA AGCGAGGAGT TTCCATCCGA TGAAGAGATA
GCCAGAAAAA CCGGTCTTGA ATTGAAGGAA GTCGTTCGTG CAAGAAACGA GATGATGAGG
AAGCAACTTC TCATGATAGA TGCGATGGAA GACGAAATCG TTCTGAAAAC AGAGGGGCCA
GACGAAAACG CGTACCGTGA ACTTCTGGTG GAGGAGATGA AGAAGGCAAT AGAAAAACTC
TCGGACAAAG AAAAGCTGGT TCTGTCTCTC AGATTCGAAA AGGATCTATC TTTGAAAGAG
ATAGCGAAAG TACTGGATGT TTCTGAATCC CGTGTTTCTC AGATTATAAG TAAGTCCCTT
CTGAAAATAA AGAAAGAAGT GATGGGCGAT GATCAGGCCG GTTGA
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| Protein sequence | MIRSLLPFIK RTAEDLAQTL PPNVEVDDLI QEGIVAALSS LERYDPSKAS FTTFIMKRVK
GAMYDYLRKI DWMPRNLRKN VKMIERAIYE SEEFPSDEEI ARKTGLELKE VVRARNEMMR
KQLLMIDAME DEIVLKTEGP DENAYRELLV EEMKKAIEKL SDKEKLVLSL RFEKDLSLKE
IAKVLDVSES RVSQIISKSL LKIKKEVMGD DQAG
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