| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpen_1800 |
|---|
| Symbol | |
|---|
| ID | 4601793 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermofilum pendens Hrk 5 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_008698 |
|---|
| Strand | + |
|---|
| Start bp | 1740167 |
|---|
| End bp | 1741576 |
|---|
| Gene Length | 1410 bp |
|---|
| Protein Length | 469 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 639774573 |
|---|
| Product | ATP-dependent protease La |
|---|
| Protein accession | YP_921198 |
|---|
| Protein GI | 119720703 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG4930] Predicted ATP-dependent Lon-type protease |
|---|
| TIGRFAM ID | [TIGR02653] conserved hypothetical protein
[TIGR02688] conserved hypothetical protein TIGR02688 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.186498 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGCCGGCA GCCTCGACGA GAAGGTTAAG AGTATATTCG GCATGGTGGC TATAAACAAG
GCCGTTGCGA ACAACGTGGC TATTTCCCGC GTGCCTAGGT TCATCTCCGA GTACTTGATA
AACTTCAAGT GCGGGGAGAG CCAGGACGCC GAGTGCGTTT CGAGGTTGTC GAGGTACATA
AGCGAGCTCT ACCCTGATCC CTCCGACAGG GAGCTCTTCC TGAGCAGGCT GAAGGAGAGG
GGCTCCCTGA AGCTTCTCGA CGAGTTCAAG GTTAGGGTAG ACCTCAAGAG AAACACGTAC
CTACTGGAGA TCCCCTCTCT GCAGATAGCC GACGCCTTCG TAAACGAGGA TATAGTGAGG
GAGAATGCGA GGCTTTTCTC CGGGCTGTGG GGGGTCGGGC TCCTCTACTA CAAGCCTGAG
CTCTCGAGAA GCAAGAACAG AACCCCCGTC GTGCTACACG ACTACAGGCC CTTCCAGGCG
TCCTACGTGG ATCTCAAGCT GTTCGTGGAG AGCCGGTCTA AGTTCACGTT CGAGGAATGG
GTAGACCTGC TGGTCACGAG CATAGGGCTA AACCCCAAGG CGTACACGCT TGGGCAGAGG
CTACTCCTAC TGTCCAGGCT GATCCCCGTC GCGGAGCCAA ACGTGAACAT CCTGGAGCTA
GGGCCCAGGG CTACGGGTAA GACCTCGCTG TACCGCAACG TGGCCTACTA CTCGAGGATC
TACGCCGGGG GGACTATAAC CCCGGCGAGG CTGTTCTTCG ACGCCAGGCT ATCCGTACCA
GGGGACCTGG CGCTACACGA CGTGATAGTA TTCGACGAGA TAAGCCGGGT AAGGCTTTCG
AACCCCGACG AGCTCGTAGC CAAGCTGAAG GACTATATGG TCGACGGCTT CTTCGAGCGC
GGAGCCCTCA AGAGAGCCCA CAGCACCTGC TCGCTGGTAT TCCTCGGAAA CGTCGACGTG
GAGAGAATAG CGGACCCGAG CCACATCCTC GAGTACCTTC CAAGCTTCAT GAGGGACTCG
GCATTCCTGG ACAGAATCCA CGGGTTTATC CCCGGGTGGA GGTTGCCGAA GATTATGAGG
AGCGAGGAGT CCCTCGCGAG CGGCTACGGG CTAGCCTCAG ACTACCTAGC GGAGGTGTTG
CACAGGCTCC GAGACGTAGC CGCCGAGAGC GTGGTAGCCG ACCATGTGGA GTTCGTCGGG
AAGTACACCA TCAGGGACGA GAAAGCCGTG AAGCGCCTAC TCTCGGGAGC CGTGAAGATA
CTCTTCCCGA ACTTCGAGTT CGACAACGCG GAGCTTGCGA GGGTGGCTAG GGGCATAGTA
GGGCTTAGAA ACAACGTGTC TAGACTGCTG ACAGCCATCT CGCCCTCCGA GTTCCCCCCG
AAAAAGCTCG AAGTAAAGGT TAGAGGGTAA
|
|---|
| Protein sequence | MAGSLDEKVK SIFGMVAINK AVANNVAISR VPRFISEYLI NFKCGESQDA ECVSRLSRYI
SELYPDPSDR ELFLSRLKER GSLKLLDEFK VRVDLKRNTY LLEIPSLQIA DAFVNEDIVR
ENARLFSGLW GVGLLYYKPE LSRSKNRTPV VLHDYRPFQA SYVDLKLFVE SRSKFTFEEW
VDLLVTSIGL NPKAYTLGQR LLLLSRLIPV AEPNVNILEL GPRATGKTSL YRNVAYYSRI
YAGGTITPAR LFFDARLSVP GDLALHDVIV FDEISRVRLS NPDELVAKLK DYMVDGFFER
GALKRAHSTC SLVFLGNVDV ERIADPSHIL EYLPSFMRDS AFLDRIHGFI PGWRLPKIMR
SEESLASGYG LASDYLAEVL HRLRDVAAES VVADHVEFVG KYTIRDEKAV KRLLSGAVKI
LFPNFEFDNA ELARVARGIV GLRNNVSRLL TAISPSEFPP KKLEVKVRG
|
|---|
| |