| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpen_1553 |
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| Symbol | |
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| ID | 4600902 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermofilum pendens Hrk 5 |
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| Kingdom | Archaea |
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| Replicon accession | NC_008698 |
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| Strand | - |
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| Start bp | 1503235 |
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| End bp | 1504323 |
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| Gene Length | 1089 bp |
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| Protein Length | 362 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 639774327 |
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| Product | spermidine/putrescine ABC transporter ATPase subunit |
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| Protein accession | YP_920952 |
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| Protein GI | 119720457 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG3842] ABC-type spermidine/putrescine transport systems, ATPase components |
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| TIGRFAM ID | [TIGR01187] spermidine/putrescine ABC transporter ATP-binding subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.00925156 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCGTACC TAAGCGCTGA GAACCTGGTT AAACGCTACG GTAAAGTGCT CGCCGTAGAC
CACGTGAGCT TCTCGGTTGA GAGGGGAGAA ATGCTCGGCC TACTGGGCCC CAGCGGCTGT
GGCAAGACTA CTACTCTTAG GATAATAGCC GGCCTAACGG TGCCAGACGA GGGAAGGGTG
CTGGTAGAGG GCGAGGACAT CACGAACGCT CCTCCCGAGA AGCGGGGCAT GGGGATGGTT
TTCCAGAACT ACGCTCTTTG GCCCCATATG ACGGTCTACG ACAACGTGGC CTTCCCGCTC
AGGGCTAGGG GCATGCCTGC AGACGAGGTT CAAAGGAGAG TTAAAGAGGC GCTGGAGATA
GTCAGGCTCT ACGAGTTGAA AGACAGGTAC CCCCACCAGC TGAGCGGGGG TCAGCAGCAG
AGAGTCGCCT TGGCGCGCGC ACTGGCTGTT CAGCCGCGGG TAATACTGCT GGACGAGCCT
TTGAGCAACT TGGACGCCAA GCTCCGCGAG GAGATGAGGT TCGAGCTGAA AGAGCTTCAG
AGAAAGCTCG GAGTAACAGC CGTGTACGTA ACGCACGACC AGGCAGAGGC CCTAGCACTC
TCGGATAGGA TAGCCGTCAT GAAGGACGGC AGAATAGTGC AGATAGGTAC TCCGAGGGAA
ATATACGAAG AGCCTGCCAA CGCCTTCGTC GCGGACTTTA TAGGCAAGAT AAACTTCCTG
GAGGGACGCA TCGAGGAGTT CCTAGGGGAA GGCTACGTCC TCGTCAGGGT GGGCGACGGG
CTTTACGTGA AGGCGTACAC AAAGAGGGTG CACGAGAAGG CCCCCGTTAT AGTGGGGGTA
AGGCCAGGCT ACATCGAGCT ACGGGGGACG CGCCCAGAGA AAGTCGACGA GTCCAGGGTG
AACGTTTTCG AGGGGGTCGT GGTTAGGAAG ACGTACCTCG GGGACGTGTA CGATTACCGG
GTGAGGGTCT CGGAGGGCGT CACCCTTAGA GTCGAGGCCA GGGAGAACTA CGATGTTGGA
TCGAAGCTGT ACCTAGTCGT GCCGGCGGAT AGGACGCTGG TTATAGACAA GAAGACCGGC
TGGGCGTAG
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| Protein sequence | MPYLSAENLV KRYGKVLAVD HVSFSVERGE MLGLLGPSGC GKTTTLRIIA GLTVPDEGRV
LVEGEDITNA PPEKRGMGMV FQNYALWPHM TVYDNVAFPL RARGMPADEV QRRVKEALEI
VRLYELKDRY PHQLSGGQQQ RVALARALAV QPRVILLDEP LSNLDAKLRE EMRFELKELQ
RKLGVTAVYV THDQAEALAL SDRIAVMKDG RIVQIGTPRE IYEEPANAFV ADFIGKINFL
EGRIEEFLGE GYVLVRVGDG LYVKAYTKRV HEKAPVIVGV RPGYIELRGT RPEKVDESRV
NVFEGVVVRK TYLGDVYDYR VRVSEGVTLR VEARENYDVG SKLYLVVPAD RTLVIDKKTG
WA
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