| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpen_1384 |
|---|
| Symbol | |
|---|
| ID | 4600667 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermofilum pendens Hrk 5 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_008698 |
|---|
| Strand | + |
|---|
| Start bp | 1337847 |
|---|
| End bp | 1339703 |
|---|
| Gene Length | 1857 bp |
|---|
| Protein Length | 618 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 639774159 |
|---|
| Product | ferredoxin |
|---|
| Protein accession | YP_920784 |
|---|
| Protein GI | 119720289 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3894] Uncharacterized metal-binding protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.809303 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGTCG TTCGGGTGGA GCCTTACGGG GCAAGGGTGG AGGTTGAGAG CGGGGCGACG
CTTCTCGAAG CCCTGGCGAG GAGCGGGGTA AGGGTTGCCT CGGTGTGCGG GGGCCGCGGC
TTCTGCGGTA AGTGCAGGGT GCTGGTAACC GGGGGCTCCT CCGCCCTCTC GCCTCCGTCG
AGGTCTGAGT CCATGCTCCT GGGCGGGGAC CTGGGATCCG GCTACAGGCT TGCCTGCCAG
GCCAGGGTGC ACGGGGACGT CGCCGTCTAC GTCCCGGAGG AGAGCAGGGA GTCGCCGGGG
GAGAGGGTGG CTGCGGTGGA CGGCTACGCG AGGCCCGTCA GGGTGGCGCC GCCGCTCAGG
AGGGTCTCGC TCTCGCTGAC TCCCCCGAGT CTCTCCGACT GGAGGTCTGA CGAGGAGCGG
CTAGCCGAGG GGCTTGGGAG GGTTCTCGGG GGGTTCGAGC CGCCGGGGCT CGACGTTCTG
AGGAGTTTGC CGCGGGTTGC CAGGGAGTCC TCCTGGTCCT TGGAGGTCGT CGCGTGGAGG
GGCAGGGTGC TCTCGGTTGA GCCGGGGGGC TCGGGTAGGG GGACGTACGC GGTGGCGGTG
GACCTCGGGA CCTCGAAGCT CGTAGCCCAC CTCGTAGACG CCTCTAGGGG CGTGGTCGTG
GCGAAGGGCT TCGCCGAGAA CCCCCAGCTC GCCTACGGGG AGGACATAAT GACGAGGATG
GACTTCGCGT CGAGGAGCCC TGGCAACCTG GACCTTCTCC GCCGCGTGCT CGTCGAGGGG
GTTAACGGGC TCGTGGCGAG GCTCCGCTCC TCGCTGGGCG TACGGGCGGA CGAGGTCTAC
GCGTTCGCGT TCGCCGGCAA CACGGCTATG CAGCACTTCC TGCTGGGGCT CGACGTGTCC
CAGCTCGCGA GGGCCCCCTA CGTGGCCGTG ACGAGGAGGG CCCTGGAGGT GAGGGCGGCG
GACCTCGGCT TGGAGGCGGG GCCGGGCGCG GTTGCCCTCG TGTTCCCGGT GATAGGGGGC
TTCGTGGGCG GCGACGCGGT GGCGGACGTG CTGGCGACGG GGCTCCACAG GAGGGATTAC
CCAGCCATGC TGGTAGACGT GGGGACGAAC ACCGAGGTTG TGGTTGGCTC CGGCGACCGC
TTCCTCTCCG GCTCCGCGCC TTCGGGCCCC GCTTTCGAGG GCATGCAGAT AACGTTCGGG
ATGAAGGCTG TCTCCGGCGC GATAGACAGG GTGAGGGTGG GGGAGGACGG GGAGGTCGAG
TACACCACGG TGGGGGGCGC GAGGCCCAGG GGGATATGCG GATCCGCTAT GATAGACCTC
GTCGCCGAGC TGTACAGGGC GGGCCTCCTG GACGCCCGGG GGAGGTTCAG GAGGGACGCT
TCGACGAGGA GGCTGAGGAG GGGGGAGAGG GGCATGGAGT TCGTCGTCGC GTGGGCCAAG
GAGACGTCGA TAGGCCGGGA CATAGTCTTC ACCGAGAAGG ACGTCGAGCA GGTGTTGCTG
GCGAAGGCCG CTGTGTCGAG CGCGGCTAGG ACCCTCATGA AGATGAGGGG GTTCAAGGCG
GAGGAGCTGG AGGAGGTCGT GGTGGCGGGC TCCTTCGGGT CGAGCCTCAA CGTCGAGAAC
GCCCTGGAGA TAGGCCTCCT CCCGCCCGTG CCCCCGGAGA AGGTGTGGTT CGCGGGGAAC
ACGGCGGTGG GGGGAGCGGT GCTCGCGCTG GTATCGGAGG AGGCGCTCAG CGAGCTCGAC
GAGATACTCT CGAAGGTGGA GTTCGTGGAG TTCGCGGCTA GCCCAGAGTG GAAGGCGGAG
TTCATGAACT CGCTCTTCAT ACCCTACAGG GAGCCGCCGA GCCGCCTCTC CAGGTAG
|
|---|
| Protein sequence | MPVVRVEPYG ARVEVESGAT LLEALARSGV RVASVCGGRG FCGKCRVLVT GGSSALSPPS
RSESMLLGGD LGSGYRLACQ ARVHGDVAVY VPEESRESPG ERVAAVDGYA RPVRVAPPLR
RVSLSLTPPS LSDWRSDEER LAEGLGRVLG GFEPPGLDVL RSLPRVARES SWSLEVVAWR
GRVLSVEPGG SGRGTYAVAV DLGTSKLVAH LVDASRGVVV AKGFAENPQL AYGEDIMTRM
DFASRSPGNL DLLRRVLVEG VNGLVARLRS SLGVRADEVY AFAFAGNTAM QHFLLGLDVS
QLARAPYVAV TRRALEVRAA DLGLEAGPGA VALVFPVIGG FVGGDAVADV LATGLHRRDY
PAMLVDVGTN TEVVVGSGDR FLSGSAPSGP AFEGMQITFG MKAVSGAIDR VRVGEDGEVE
YTTVGGARPR GICGSAMIDL VAELYRAGLL DARGRFRRDA STRRLRRGER GMEFVVAWAK
ETSIGRDIVF TEKDVEQVLL AKAAVSSAAR TLMKMRGFKA EELEEVVVAG SFGSSLNVEN
ALEIGLLPPV PPEKVWFAGN TAVGGAVLAL VSEEALSELD EILSKVEFVE FAASPEWKAE
FMNSLFIPYR EPPSRLSR
|
|---|
| |