| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpen_1056 |
|---|
| Symbol | |
|---|
| ID | 4601442 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermofilum pendens Hrk 5 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_008698 |
|---|
| Strand | + |
|---|
| Start bp | 995603 |
|---|
| End bp | 996544 |
|---|
| Gene Length | 942 bp |
|---|
| Protein Length | 313 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 639773834 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_920459 |
|---|
| Protein GI | 119719964 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1175] ABC-type sugar transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.355645 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGCCCGTAT CCTCCGTTAA GAAGTATAGC GCCCCCATAC TCTTCCTCCT ACCGGCGCTC
GTAGTGCTCG CCATGGTAAG CTTCTACCCA CTAGTATTCG GCTTCTACAT GGCGTTCACG
GACATGTCCA CAACGAAGGG TAAGTGGATC TCCTGGGACT TCGTAGGCCT CGAGAACTTC
CGGAGAATAG TGGAGGAGCT GCTAACGCCC GAGCTCGGCC TGGGTAGAGC CTTGCTCAAC
ACAGTGTTCT TCACGGTGGT AAACGTCGCC CTGCAGGTAC TAGTCGGGGT AGCCTTCGCC
TTCATGCTTA ACTCGGACAA GCTACTCTGG CGCAGGTTCT GGCAGGCTGT GTTCATCGTT
CCCTGGGCCG TCCCAGGCTA TATAAGCATA ATGGCGTGGT TCTTCCTCTA CCAGTACTCC
TACGGCTACT TCAACCAGAT ACTCATGAAC CTGGGGCTCG AGAGAATAGA CTGGCTCGGG
CAGAGGCTGG ACACGTTCTG GCCCTGGGTG TCCATCAACG CTACGAATGT CTGGCTGGCG
TACCCCTTCA TAATGACGGT CACCCTGGCG GCTCTGCAAA CGCTTCCGAG GGACCTGCTG
GACGCGGCGA AGGTCGACGG CGCGGGCGGG TGGCAGACGT TCCGCTACGT AGTGCTCCCG
CACATAAAGC CGCCCCTAAC GATCGCGACG GTTTTGACTA CGATAACGAC CTTCCAGCAG
TTCGGCGTAG TGTGGCTCTT GACGGGGGGA GGCCCGCAGA TATTCGTGAA GGCTATCGGC
ACCACCATCT ACGTTACCGA CCTGCTCATG ACCTATGGCT ACAGGACGAT ATGGCAGTTC
GGGGACTACG GCTACGGAGC GGCCTTCTCC ATATTCCTGG CACTGCTCGT AGTACCGGCC
AGCATATACG CCATGAAGAA GCTGAGAGTC GTGGGTGAGT AG
|
|---|
| Protein sequence | MPVSSVKKYS APILFLLPAL VVLAMVSFYP LVFGFYMAFT DMSTTKGKWI SWDFVGLENF
RRIVEELLTP ELGLGRALLN TVFFTVVNVA LQVLVGVAFA FMLNSDKLLW RRFWQAVFIV
PWAVPGYISI MAWFFLYQYS YGYFNQILMN LGLERIDWLG QRLDTFWPWV SINATNVWLA
YPFIMTVTLA ALQTLPRDLL DAAKVDGAGG WQTFRYVVLP HIKPPLTIAT VLTTITTFQQ
FGVVWLLTGG GPQIFVKAIG TTIYVTDLLM TYGYRTIWQF GDYGYGAAFS IFLALLVVPA
SIYAMKKLRV VGE
|
|---|
| |