Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tpau_3189 |
Symbol | |
ID | 9157361 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Tsukamurella paurometabola DSM 20162 |
Kingdom | Bacteria |
Replicon accession | NC_014158 |
Strand | + |
Start bp | 3293455 |
End bp | 3297111 |
Gene Length | 3657 bp |
Protein Length | 1218 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | |
Product | transcription-repair coupling factor |
Protein accession | YP_003648115 |
Protein GI | 296140872 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.905154 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGTCTGATG CCGCCTCCGC GCCTACCCCC GCACTCTCCG GATTGACCAG GGCGGTCGCC GCGGACCCGG ACGTCGTCGC GTTCGCCGGC GCGGCCGGAC GCCCCGACCT CACGGTGACC GCCGTCGACG GGGCCCGCCC GTTCCTCCTC TCGGCGCTGG CCGGTCAGGC GCCCGTCCTG GTGGTCACCG CCACCGGCCG CGAGGCCGAC GATCTCACCT CGGAACTGCG CGAAACCCTC GGCGCGGACG CCGTCACCCA GTTCCCGAGC TGGGAGACCC TGCCGCACGA GCGCCTCTCC CCCGGCGCCG ACACCGTCGG CCGCCGCCTG CAGGTGCTCC GCCGCCTCGC CTGGCCCGAT GACGCCCAGT ACGGCGCGCC CCTGCGCGCC GTGGTCGCAA CCGTCCGCTC CCTGGTGCAA CCCATGGCAC CGGGGCTGGG CGATGCCCCG TCGGTCACCC TGCGCGAGGG CGAGGAATTC GATTTCGAGG AGCTCATCGA AACCCTCGTC GAACTCGCGT ACACCCGCGT CGACATGGTG GGCAAGCGCG GCGAGTTCGC GGTCCGCGGC GGTATTCTCG ACATCTTCCC CACGACCACG GATCTCCCTG TGCGCGTGGA ATTCTGGGGT GACGAGATCA CCGACCTGCG CGCCTTCTCC GTTGCCGACC AGCGCAGCCA GCCCGAGGTG CAGGTGGGCA CGGTGCACGT GTATCCGTGC CGCGAACTGT TGCTCACCGC CGATGTGCGC GACCGCGCCG CCACGCTCAA GGCGGAGCAC GAATCCGACG CCGCGCTCGC CGAGATGCTG GAGAAGCTCG CGCAGGGCAT CCCCGTCGAG GGCATGGAGG CGCTCATCCC CGCCCTGGTA CCGGGCGAAC TGCAACTGCT CACCGATGTG CTCCCCGACG GCACCCACAC CGTCCTGCTC GATCCCGAGA AGATCCGCAC CCGCGCAGCC GATCTCGCAC GCACCGGACA GGAGTTCCTG GAAGCCTCCT GGACCGCCGC GGCGTTGGGA TCCTCCGCTC CGCTCGACCC GAGCGGCATC GACCTCGGCG CCAGCGCCTA CCGCGGCCTG GACGACGTGC ACGCCTCCGT ATCTGCGCAG GGCCACCCGT GGTGGACCAT CTCGCCGCTC GCCGCGGGCC CGGACACCGA CGACGATCAC CTCACCGTGC ACGCCGAACA CGCCCCCGCA CCCCGCGGCT CGGAAGCCGA GGCGGAGAAG CTGTTCGCCA CACTGCGCGC CCACGCCGCA TCCGGCGGCA GCGGTGTGAT CGTGGTGGCC GGGCGGGGAA CCCGGGCCCG CATTCTGGAG CGGCTGCGCG ATGCCGAGGT GCCCGCCTCC GAACTCGAGG CGGGAGAGGG GCCCCGCCCG GGCACCGTCG GCGTGCTCCG CGGCAGCCTG CAGACCGGCT TGACGGTGCC CTCGCAGCAG CTGGTACTGC TCGCCGAACC CGACCTCACC GGTAACCGGG TGGCGGGCGT CGGTGACGGC CGCCGGCTTC CGGCCAAGCG CCGCAACCAG GTAGACCCGC TCGCCCTCAC GGCCGGCGAT CTGGTGGTCC ATGACGAACA CGGCATCGGG AAGTTCGTCG AGATGATCGA ACGCACCGTG GCCGGGGCGC GCCGCGAGTA CCTGGTGATC GAATATGCGC CCAGCAAGCG CGGCCAACCC GGCGACAAGT TGTTCGTGCC CATGGAATCG CTCGACCAGC TCTCCCGGTA CGTCGGCGGC GAGATGCCCG CGCTGTCGAA GATGGGCGGC AGCGATTGGC AGAACACCAA GCGCAAGGCC CGCAAGGCCG TTCGGGAGAT CGCCGGCGAG CTGGTACAGC TCTACGCCGC CCGCAACGCG GCGCCCGGCC ACGCGTTCGC GCCCGACAGT CCGTGGCAAC GCGAGATGGA GGACGCCTTC CCGTTCACCG AGACGGTCGA CCAGATGACG GTGATCGGCG ATGTGAAATC CGATATGGAG AAGGCGGTCC CGATGGACCG GGTGGTGATC GGCGACGTGG GGTACGGCAA GACCGAGATC GCCGTACGCG CCGCGTTCAA AGCCGTGCAG GACGGCAAGC AGGTGGCCGT GCTCGTGCCC ACCACACTGC TCGCACAGCA GCACCTGAAG ACCTTCGTCG ACCGGATGCA GGGCTTCCCG GTCACGGTGA AGGGCCTGTC CCGCTTCACC GACAGGCACG AGACCGAGCA GGTCCTCGAA GGCCTGGCCG ACGGCAGCGT GGACATCGTC GTGGGCACGC ACCGACTGCT GCAGACCGGC GTGCGGTGGA AGGATCTCGG GCTCGTGGTC GTGGACGAGG AGCAGCGGTT CGGGGTGGAG CACAAGGAGC ACATCAAGGC ATTGCGCACC AACGTCGACG TGCTCACGAT GAGCGCCACC CCCATTCCCC GCACCCTGGA GATGAGCATG GCGGGCATCC GCGAGATGTC CACCATTCTC ACCCCACCGG AGGAGCGCCA CCCCGTGCTC ACCTATGTGG GCCCGTACGA CAACAAGCAG GTGGCCGCCG CCATCCGGCG CGAGCTGCTG CGCGACGGCC AGGTGTTCTA CGTGCACAAC CGCGTCAGCT CGATCGACAA GGCCGCCAAG CAGATCCGGG ATATGGTTCC CGAGGCGCGC GTCGTGGTGG CGCACGGCCA GATGGGCGAG GAAGCGCTGG AGAGCACGGT GCAGGGTTTC TGGAACCGCG AGTTCGACGT GCTCGTGTGC ACCACCATCG TCGAGACCGG CCTGGACATC TCCAACGCGA ACACCCTCAT CGTGGAGCGC GCGGAGAACC TGGGTCTCTC CCAGCTGCAT CAGTTGCGCG GACGTGTGGG TCGCTCCCGC GAACGCGGCT ATGCGTACTT CCTCTACCCG TCGGAGAAGC CACTCACCGA GACCGCCTAC GATCGCCTGT CGACCATCGC GCAGAACAAC GAGCTCGGCG CCGGCATGGC CGTTGCGATG AAGGATCTGG AGATCCGCGG CGCCGGAAAC GTGCTGGGCG CAGAGCAGTC CGGACACGTC GCGGGTGTCG GCTTCGATCT CTACGTGCGC CTCGTGGGCG AAGCGGTCGA AGCTTTCCGT GCAGCCGCCG ACGGAACGCC GATCACCCTC CCGGAAGAGC AGAAGGAGGT GCGCATCGAC CTGCCGGTGG ATGCGCACAT CCCACCCGAC TACGTCACCA GCGATCGACT CCGCCTGGAG GCCTACCGCA AGCTGGCAGC GGCGCACGAT GATTCGGCTG TCGCCGAAGT ACTCACCGAG CTCACCGACC GATACGGGCC GCCCCCGGTC GAGGTGGAAC GGCTGGCCGC GATCGCCCGA CTGCGATCGC TGGCCCGGGC CGCCGGCGTC ACCGAGGTCA GCGTGAGCGG CACCACCGTT CGCGTCTCTC CGATGGAACT GCGGGACTCA CAACAGCTCC GGCTCAAACG GCTCTATCCG GGCGGCTCGT ACCGGGCCAC CACACGCACC GTCACCTTCC CGATCCCCCG CGTCGAAGGC GGCGGCGTCG GCAGCGAGCG AGTACGCGAT ATCGCACTGC TCCAGGTGGT CGCGGACTTC CTGGCGGCGA TGGACGGCAA GGGCGCGGGT TACTGGCGCC TCGATCAGCC ACCGCGCGCC GCGGCACCGG CGGAGGCCGG TGCATGA
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Protein sequence | MSDAASAPTP ALSGLTRAVA ADPDVVAFAG AAGRPDLTVT AVDGARPFLL SALAGQAPVL VVTATGREAD DLTSELRETL GADAVTQFPS WETLPHERLS PGADTVGRRL QVLRRLAWPD DAQYGAPLRA VVATVRSLVQ PMAPGLGDAP SVTLREGEEF DFEELIETLV ELAYTRVDMV GKRGEFAVRG GILDIFPTTT DLPVRVEFWG DEITDLRAFS VADQRSQPEV QVGTVHVYPC RELLLTADVR DRAATLKAEH ESDAALAEML EKLAQGIPVE GMEALIPALV PGELQLLTDV LPDGTHTVLL DPEKIRTRAA DLARTGQEFL EASWTAAALG SSAPLDPSGI DLGASAYRGL DDVHASVSAQ GHPWWTISPL AAGPDTDDDH LTVHAEHAPA PRGSEAEAEK LFATLRAHAA SGGSGVIVVA GRGTRARILE RLRDAEVPAS ELEAGEGPRP GTVGVLRGSL QTGLTVPSQQ LVLLAEPDLT GNRVAGVGDG RRLPAKRRNQ VDPLALTAGD LVVHDEHGIG KFVEMIERTV AGARREYLVI EYAPSKRGQP GDKLFVPMES LDQLSRYVGG EMPALSKMGG SDWQNTKRKA RKAVREIAGE LVQLYAARNA APGHAFAPDS PWQREMEDAF PFTETVDQMT VIGDVKSDME KAVPMDRVVI GDVGYGKTEI AVRAAFKAVQ DGKQVAVLVP TTLLAQQHLK TFVDRMQGFP VTVKGLSRFT DRHETEQVLE GLADGSVDIV VGTHRLLQTG VRWKDLGLVV VDEEQRFGVE HKEHIKALRT NVDVLTMSAT PIPRTLEMSM AGIREMSTIL TPPEERHPVL TYVGPYDNKQ VAAAIRRELL RDGQVFYVHN RVSSIDKAAK QIRDMVPEAR VVVAHGQMGE EALESTVQGF WNREFDVLVC TTIVETGLDI SNANTLIVER AENLGLSQLH QLRGRVGRSR ERGYAYFLYP SEKPLTETAY DRLSTIAQNN ELGAGMAVAM KDLEIRGAGN VLGAEQSGHV AGVGFDLYVR LVGEAVEAFR AAADGTPITL PEEQKEVRID LPVDAHIPPD YVTSDRLRLE AYRKLAAAHD DSAVAEVLTE LTDRYGPPPV EVERLAAIAR LRSLARAAGV TEVSVSGTTV RVSPMELRDS QQLRLKRLYP GGSYRATTRT VTFPIPRVEG GGVGSERVRD IALLQVVADF LAAMDGKGAG YWRLDQPPRA AAPAEAGA
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