Gene Tpau_2792 details

Gene Information

• Locus tag: Tpau_2792
• ID: 9156957
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Tsukamurella paurometabola DSM 20162
• Kingdom: Bacteria
• Replicon accession: NC_014158
• Strand: +
• Start bp: 2890360
• End bp: 2892495
• Gene Length: 2136 bp
• Protein Length: 711 aa
• Translation table: 11
• GC content: 65%
• Product: choline/carnitine/betaine transporter
• Protein accession: YP_003647729
• Protein GI: 296140486

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTGATC CTGAATCCTC ACACACATCG AAACCAGTAG ACGACGATTC GACACCGACG 
AGCTCCTTGA ACCGCCGAGT CTTCTTCGCC GCCGCCGGCT CGGTTCTGGC CTTCGCCCTC 
TGGGCGCTCG CCTCTCCCGG GACCGCGGAG GGCGTGATCA GCGGCGTGGT CGACTTCATC 
ACCACCTGGT TCGGCTGGTG GTACTTCCTG CTGGCCACGG TGATCGTGGG CGTGGTGGTG 
TTCATCGCGG TGAGTCGGTA CGGCAGATAC CGCCTGGGCC CCGAGGAATC ACGACCCGAA 
TACAACCTGT TCACCTGGAC CGCGATGCTG TTCGCGGCGG GTATCGGCAT CGACCTGATG 
TTCTTCTCGG TCGCGGAACC GGTGAGCAAC TACCTGAATC CGCCGGTGGG CGCTGGCGAA 
ACCAACCACG CGGCGCGCGA GGCGGTCACC TGGACGGTGT TCCACTACGG CCTCACCGGA 
TGGGCGATGT ACGCGCTGAT GGGCGGAGCC CTCGCGTATT TCGCCTTCCG GCATAACCTT 
CCGCTCACCA TCCGCGCAGC GCTGTATCCG ATCCTGGGCA AGCGCGTGCA CGGCCGGTTC 
GGCGACGCGG TCGATGTGGC CGCCGTGCTC GGCACGATCT TCGGGATCGC CACATCGCTG 
GGTATCGGCA TCGTGCAGCT CAACTACGGT CTGCACCAGC TGTTCGGCAT TCCGCAGGGC 
AAAGCGGCGC AGATCGGTCT CATCGTGCTG TCGGTGGTGA TCGCCACGGT CTCCGCGACG 
ACGGGCGTGG ACAAGGGAAT CCGGCGGCTC AGCGAGCTCA ACGTGATCAT GGCGGTCGCG 
ATGCTGGTGT ACATCCTGGT AGCCGGGCGA GCCGACTTCC TGCTCAACGG ACTGGTGCAG 
AACACCGGCG ACTACCTGTC CACGTTCCTC GATCGCACCA TGGACACCTT CGCCTGGGAC 
CAGGTCAACC CGGAGACCGC GGGCGATGCG CGCGGCTGGC TGAACTCGTG GACCCTGTTC 
TTCTGGGCCT GGTGGGTGGC CTGGGCGCCG TTCGTGGGCC TGTTCCTGGC ACGGATCTCG 
CGCGGACGTA CTCTGCGCCA GTTCATCTTC GGTGTACTCG TGGTGCCGTT CAGCTTCATC 
CTGGTGTGGA TCTCGGTATT CGGCAACAGC GCTCTCGAGG TGGCGCGCGG CGATAAGGAC 
TTCGCCGAGG CCACCGCCTC CGCACCCGAG GTCGGCTTCT ACTCGCTGCT CGAGAAATAC 
CCCGGCGCAC CGATTCTGCT GGCCATCGCC ACTTTCACGG GACTGCTGTT CTACGTGACC 
AGCGCCGACT CGGGATCACT GGTGATGGGC AACTTCACCT CGAAACTGTC CGACCCCATG 
GCCGACTGTG CCCGGAGCAC CCGCATCTTC TGGTCGTTCG CGATCGGCCT GCTCACCCTC 
TCGATGCTGT TCGCCGGCAA CGAAGGATCG ATCGAGACAC TGCAGAAGGC CACGATCATC 
ATGGGCCTGC CGTTCTCGTT CATCCTCGGG CTGGTGGGAC TGTCCCTCGT GCGCGCGCTG 
CACACCGAGT CCTACAAGCT GGACAGTTAC CGTGCAGCCC TGCCGAAGTC GCTGGCCGCG 
GGCCGCGGAC CCACCGAACC GGGAAGCTGG CGGCGTCGGC TGTTGTCGAC CATCCACTAT 
CCGGGACGCG CAGCGACGCA ACGCTTCCTG GAGAACACCG TGGCTCCGGC CATGCGGGAA 
GTGCGCGCGG TCTTCGACGG TGAGGGGATG ACCGCCACCG TCGACGAATC CGGGCGCAGC 
GAATCGCTGC CGTCGCCGAC GCTCCGCGTC GATCTCGCCG GTGAACCGCA CTTCGAGTAC 
TGCGTCTGGC CCGTCTCGGC GCCGGCGCCG AGCTACGCGG TGCTCGCGCA GCGCTCCGCC 
GACCGGTACT TCCGCTGTGA GGTTTATCTG GCCGAGGGCT CGCAGGGCTA CACGCTCAAC 
GGCTATACCC GCGAGCAGAT CATCGGCGAC ATCCTCGACC AGTACGAGCG TCACCTCGGA 
TATCTCCACC TGCGGCGGTC CGCCGTCGAT CACTACTCCG AATCCAGCGA CTCCACTCCC 
GAGTCCAGCA CCGAACCGGA AGGGACACCC GCATGA 

 

Protein sequence

MSDPESSHTS KPVDDDSTPT SSLNRRVFFA AAGSVLAFAL WALASPGTAE GVISGVVDFI 
TTWFGWWYFL LATVIVGVVV FIAVSRYGRY RLGPEESRPE YNLFTWTAML FAAGIGIDLM 
FFSVAEPVSN YLNPPVGAGE TNHAAREAVT WTVFHYGLTG WAMYALMGGA LAYFAFRHNL 
PLTIRAALYP ILGKRVHGRF GDAVDVAAVL GTIFGIATSL GIGIVQLNYG LHQLFGIPQG 
KAAQIGLIVL SVVIATVSAT TGVDKGIRRL SELNVIMAVA MLVYILVAGR ADFLLNGLVQ 
NTGDYLSTFL DRTMDTFAWD QVNPETAGDA RGWLNSWTLF FWAWWVAWAP FVGLFLARIS 
RGRTLRQFIF GVLVVPFSFI LVWISVFGNS ALEVARGDKD FAEATASAPE VGFYSLLEKY 
PGAPILLAIA TFTGLLFYVT SADSGSLVMG NFTSKLSDPM ADCARSTRIF WSFAIGLLTL 
SMLFAGNEGS IETLQKATII MGLPFSFILG LVGLSLVRAL HTESYKLDSY RAALPKSLAA 
GRGPTEPGSW RRRLLSTIHY PGRAATQRFL ENTVAPAMRE VRAVFDGEGM TATVDESGRS 
ESLPSPTLRV DLAGEPHFEY CVWPVSAPAP SYAVLAQRSA DRYFRCEVYL AEGSQGYTLN 
GYTREQIIGD ILDQYERHLG YLHLRRSAVD HYSESSDSTP ESSTEPEGTP A