Gene Tpau_1943 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTpau_1943 
Symbol 
ID9156098 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameTsukamurella paurometabola DSM 20162 
KingdomBacteria 
Replicon accessionNC_014158 
Strand
Start bp2028813 
End bp2029937 
Gene Length1125 bp 
Protein Length374 aa 
Translation table11 
GC content65% 
IMG OID 
Productprotein-export membrane protein SecF 
Protein accessionYP_003646895 
Protein GI296139652 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00503357 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCGACA CCACGACTCA GGTCTCCGAG CAGGAGAAGA AGGCCGGATT CTTCACCAAG 
CTCTACACGG GCACCGGTGC CTTCGACATC ATCGGACGCC GCAACCGCTA CTACATCGCC
ACCGGCATCA TCATCGTGAT CGCGATCCTC GGCATCCTGA TCCCGGGCTT CAAGCTGAGC
ATCGACTTCG AGGGCGGTAC CCAGGTGTCG TTCCCGGTCG GCAGTGCGCA AGCCGATACC
GCGAAGGCTC GCGAGGTGGT GCAGTCCGCG ACCGGTATCG CACCGTCTGC CGTGCAGACC
GCCGGATCCG GTGCCTCCCA GACGTACCAG ATCTCGACCT CCGAGCTCAG TGCGGACCAG
ATCACCAAGG CCCGCGCCGC GCTCTTCGAG CAGTTCCAGC CCCCGGGCCG CGACGGCAAG
CCCTCCGCGA ACACCATCAG CTTCTCAGCG GTGAGTTCGA CGTGGGGCGG ACAGATCACC
CAGCGCGCGC TGCTCGGTCT CATCGTGTTC CTGGTGCTGG TGACGATCTA CATCGCGGTC
CGCTTCCGGG AGTTGGAGAT GGCGCTCGCC GCACTGGCAT CGCTGTTCTT CGACGTGATC
GTCACCGCCG GCGTCTATGC CTGGTCGGGG TTCGAGGTCA GTCCCGCAAC GGTGATCGGC
CTGCTCACCA TCCTGGGCTT CTCGCTCTAC GACACGGTGG TCGTCTTCGA CAAGGTCGAG
GAGAACGTGC GCGGCGTACT GCACACCAAC CGGAGGACCT ACGCCGAACA GGCCAACCTC
GCTGTGAATC AGACTCTGAT GCGGTCGATC AACACCACGG TCATCTCGGC GCTGCCGATC
GTGGCGCTGA TGGTGGTCGC CGCATGGATC CTGGGCGTGG GCACCCTGAT GGACCTCGGC
CTGGTCCAGT TGGTCGGTGT GGTCGTCGGT ACGTACTCGT CGGTGTTCTT CGCGTCGCCG
CTGTTGGTGA CACTCAAGGA GCGCAAGCCC GAGTACAAGG CGCACACCCA GAAGGTGCTC
AACAAGCGCC GGGCCGTGGG CGTCGAGGCG GAGTCCGCTG TGGTGCAGAC CGCACAGCGG
CTCTCCCGTC CGCCGGTGCG CAAGCGCGAC CGCCGTCGTG GCTGA
 
Protein sequence
MSDTTTQVSE QEKKAGFFTK LYTGTGAFDI IGRRNRYYIA TGIIIVIAIL GILIPGFKLS 
IDFEGGTQVS FPVGSAQADT AKAREVVQSA TGIAPSAVQT AGSGASQTYQ ISTSELSADQ
ITKARAALFE QFQPPGRDGK PSANTISFSA VSSTWGGQIT QRALLGLIVF LVLVTIYIAV
RFRELEMALA ALASLFFDVI VTAGVYAWSG FEVSPATVIG LLTILGFSLY DTVVVFDKVE
ENVRGVLHTN RRTYAEQANL AVNQTLMRSI NTTVISALPI VALMVVAAWI LGVGTLMDLG
LVQLVGVVVG TYSSVFFASP LLVTLKERKP EYKAHTQKVL NKRRAVGVEA ESAVVQTAQR
LSRPPVRKRD RRRG