Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tneu_0579 |
Symbol | |
ID | 6165689 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thermoproteus neutrophilus V24Sta |
Kingdom | Archaea |
Replicon accession | NC_010525 |
Strand | - |
Start bp | 529648 |
End bp | 530511 |
Gene Length | 864 bp |
Protein Length | 287 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 641667732 |
Product | CRISPR-associated RAMP Csa1 family protein |
Protein accession | YP_001793967 |
Protein GI | 171185048 |
COG category | [S] Function unknown |
COG ID | [COG4343] Uncharacterized protein conserved in archaea |
TIGRFAM ID | [TIGR01896] CRISPR-associated protein, Csa1 family |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.000306533 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.121331 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTTAGGG AGTTTAGACT TGTGAGGGGG CTTAGGGTTG AGGTTGGGGA GGAGTTGAGG GGTTGGAGAT GGGGGGAGCC TCCTGTGGCG CCTCCGCCGC TTGGGGTGAG GCTTTCGGTT TCTGAAATCG TCGGCGGAGT TTGTGAATCT AGGCGTGACC TGTACCTGCG GAGGGTCGCC AAGGTGAGGG TGGAGGCCAA CGGCTCGCTG AAGTTCGGCG GGTATATACA CGAGGTGTTT AGACGTAGTC TCGTTAGGCT GAGGAGGCTG GTGGAGGAGG GGCTGAGGGG GTGGGATCTC ATCTCCGCGT TTAAGCCTGA GGAGGTGGCG GCTGAGGCCG CTGCGGCGGT TGGCCACGAG GCAGATCAGC GGGGGGTCGA GTTGGCGAGG TTTCTGGCGG TGCAGGTGGC GGCTAGGGTA GACGAGGTGG CGGCGCGGGG GAGCTTCGAC CCCTACATGC TCGCGGCGCG GGCGGTGCCT CTGCTGGCTG AATACGTGAT CGACGGAAGG CCGCTGGGGC TCACCCTGGT TAGGGCAGAC GCCCTTTTCC ACAACGTCGT CGTCGAGGTG AAGGTGGGGC CTGAGGACGA TAGACACGCC TTGGCCCTCG CCGGCTACGC GCTTGCCGTT GAGGCAGACG AGGAGGTCCC CGTCGACGCG GGGCTGTTGA TATACATCTC CTTCAACGGA GGGGTGAAGG TGAGGGCTAG GCCTGTGGCT ATCGGCGAGG GGCTGCGGCG GCAGTTCCTC GAGGAGAGAG ACAGACTTAT GGAGTTTCTA CACTCGGGGG CCGACCCGGG TCTCTCCCCT AGGTGCGACG ACAGATGTGT CTTCTACAGG TACTGCCATG GAGGTGGTAG TTAA
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Protein sequence | MFREFRLVRG LRVEVGEELR GWRWGEPPVA PPPLGVRLSV SEIVGGVCES RRDLYLRRVA KVRVEANGSL KFGGYIHEVF RRSLVRLRRL VEEGLRGWDL ISAFKPEEVA AEAAAAVGHE ADQRGVELAR FLAVQVAARV DEVAARGSFD PYMLAARAVP LLAEYVIDGR PLGLTLVRAD ALFHNVVVEV KVGPEDDRHA LALAGYALAV EADEEVPVDA GLLIYISFNG GVKVRARPVA IGEGLRRQFL EERDRLMEFL HSGADPGLSP RCDDRCVFYR YCHGGGS
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