| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tneu_0080 |
|---|
| Symbol | |
|---|
| ID | 6164371 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermoproteus neutrophilus V24Sta |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_010525 |
|---|
| Strand | + |
|---|
| Start bp | 72550 |
|---|
| End bp | 73545 |
|---|
| Gene Length | 996 bp |
|---|
| Protein Length | 331 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 641667247 |
|---|
| Product | H/ACA RNA-protein complex component Cbf5p |
|---|
| Protein accession | YP_001793484 |
|---|
| Protein GI | 171184565 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0130] Pseudouridine synthase |
|---|
| TIGRFAM ID | [TIGR00425] rRNA pseudouridine synthase, putative
[TIGR00431] tRNA pseudouridine 55 synthase
[TIGR00451] uncharacterized domain 2 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.178289 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGGTGCG GAAGCAGAGA GGTTTTTGTA AAGATACAGG AGGCCACTAA CCCGGAGTGG
GGCAAGCCGC CCTCTCGGCG CTCTGCGGAG GAGCACATCA AGTATTCCCT TGTCCTTCTG
GACAAGCCCA GGGGGCCCAG TAGCCACGAG GTGGCGGCTT GGGTGAAGAA GATACTCGGC
GTGGAGCGGG CCGGCCACGC GGGGACGCTC GACCCCAAGG TATCCGGCGT ACTGCCGATC
GCAGTGGCCG AGGGCACGAA GGTGCTTCTT GCGCTTTCTC GCTCAGATAA AGTCTACGTG
GCTGTGGCGA AGTTCCACGG GGATGTAGAC GAGGGGAAGC TCAGGGCTGT GTTGGGGGAG
TTCCAGGGGA TCATCTACCA GAGGCCTCCC CTCCGCTCCG CGGTGAAGAG GCAGCTGAGG
ACTAGACAGG TGTACTCCAT CGAGCTTCTG GAGCTAGACG GGAGATACGC CGTGATTAAG
ATGCATGTCG AGGCCGGCAC CTACGCGAGA AAGCTTATCC ACGACATTGG GGAGGTGCTG
GGCGTGGGGG CAAACATGAG GGAGCTCAGG AGGGTGGCCG TCTCTTGCTA CACGGAGGAG
GAGACCGTCA CGCTACAGGA CGTGGCGGAC GCCTACTATA TATGGAGGAA GTACGGCGAC
GACACCTACC TCAGGAGGGT TCTGCTACCT ATTGAAGAAA TCGCGAGGCA CCTCCCCAAG
ATCTGGGTTA GAGACAGCGC GGTGGATGCC CTCTGCAACG GTGCCCCCCT TGCGGCCCCG
GGTGTGGCCA AGTTCGAAGC GCCGTTTTCA AGAGGCGAGC TCGTGGCGTA CTTCACCCTC
AAAGGCGAGC TCATAGGGGT AGGCAGAGCT TTGGTAGACA GCGAGGAGGT GAAGAAGATG
GAGAAGGGGC TGGTGGCTAG GACAGACAGA GTGGTGATGA AGAGGGGGAC GTACCCGCCG
CTGTGGAAGC GTCGTGGCGA GGGGGCTAAA GCTTAA
|
|---|
| Protein sequence | MRCGSREVFV KIQEATNPEW GKPPSRRSAE EHIKYSLVLL DKPRGPSSHE VAAWVKKILG
VERAGHAGTL DPKVSGVLPI AVAEGTKVLL ALSRSDKVYV AVAKFHGDVD EGKLRAVLGE
FQGIIYQRPP LRSAVKRQLR TRQVYSIELL ELDGRYAVIK MHVEAGTYAR KLIHDIGEVL
GVGANMRELR RVAVSCYTEE ETVTLQDVAD AYYIWRKYGD DTYLRRVLLP IEEIARHLPK
IWVRDSAVDA LCNGAPLAAP GVAKFEAPFS RGELVAYFTL KGELIGVGRA LVDSEEVKKM
EKGLVARTDR VVMKRGTYPP LWKRRGEGAK A
|
|---|
| |