| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tneu_0068 |
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| Symbol | |
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| ID | 6164678 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermoproteus neutrophilus V24Sta |
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| Kingdom | Archaea |
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| Replicon accession | NC_010525 |
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| Strand | + |
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| Start bp | 63169 |
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| End bp | 64923 |
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| Gene Length | 1755 bp |
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| Protein Length | 584 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641667233 |
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| Product | ATP-dependent DNA ligase |
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| Protein accession | YP_001793472 |
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| Protein GI | 171184553 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase |
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| TIGRFAM ID | [TIGR00574] DNA ligase I, ATP-dependent (dnl1) |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.00333872 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.197829 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCAGTTTG GGGAGCTGGT GAAAACCCTC GCCGCTGTGG AGTCCACCAC CCAGAGGACC
ACCATGGTTA AGCTCCTCAC CTCCCTCCTC AAGAGGGCGA GGCCGGACGA GGTGGACAAG
ATAGTCTACT TCGTGCTGGG GGATCTCAAG CCCCCGTGGG AGGGGGTGGA GCTGGGCGTG
GCTGAGAAGC TCTGTCTCAG GGCTGTTTCT AAGGCGGCGG GTACGCCGCT GTCTGAGCTG
GAGGCAGTCT ACAAGCGGAC TGGGGACGTG GGCGAGGCGG CCAGGAGAGC CCTCTCCGCG
GCTAAGAGGC CGGGTCTCCT GGCGTTTGGC CAGCAGAAGC CTCTGGAGGT GTCGGAGGTG
TACGACACCC TCCTAAAGGT GGCGAAGGCG GCGGGGGAGG GGGCGCAGGA CATGAAGATA
TCGCTTCTGG CCTCCCTCTT CGCCAGAGCT ACCCCCGAGG AGGCTAAGTA CATCGCCAGG
TTTGTGGTGG GGAAGCTCAG GCTCGGCGTC GCCGATATGA CGTTGCTGGA GGCGCTCTCT
GAGGCCTTCG GCGTGGGGAA GGAGGCCCTC GAGAGGGCGT ACCACGTGTG GCCAGATATG
GGCAAGCTGG CGCGCCACGT GGCCGAGGGC CGGCCCCTCG AGGAGGTCAA GATCACGCCG
GGGGTCCCCG TACTCCCCAT GCTTGCGCAG AGGCTCTCCA GCGCTTCCGA GATCTTGGCG
AAGCTCGGCG GCGCGGCTGT CTGCGAATAT AAATACGACG GCGAGAGGGC GCAGATTCAC
ATCAGCGGCG GCTCGGTCAA GATCTTCAGC AGGAGGCTGG AGGACATCAC CCACGCCTAT
CCAGACGTGG TCAAGGCCGT GAAGGAGTCC GTGGCGGCGG GGGAGGCCAT ACTGGAGGGG
GAGATAGTGG CGGTCGACCC AGATACGGGG GATATGTTGC CGTTTCAGGA GCTGATGCAT
AGGAAGAGGA AGCACGAGGT GGCGGCGGCT GTGGAGAGCT ACCCAGCGGT TTTAAACCTC
TTCGACGTCC TCTACCTAGA CGGCGAGGAT CTCACGGGGG AGCCCCTCAT CTACAGAAGG
CTGAGGCTGT CGGAGGTTGT GCATGAGACG GAGAAGGTCT CGATAGCCAG GTGGAGGCTT
TTCGACGACC CCGGCGAGGT AGACGTCTTC TTCCACGAGG CGGTCTCCCT AGGGATGGAG
GGCTTGGTCT GTAAATCCCC CACGTCTATA TACGAGATGG GGGCCCGGGG GTGGAACTGG
ATTAAGTACA AGAGGGACTA CAAAAGCGAG ATGATTGACA CCGTGGATCT GGTGGTGGTA
GGCGCCTTCT ACGGCAGAGG CAAACGGGCG GGGCTCTACG GCGCCTTCCT CCTAGCCGCC
TACGACCCCC AGACGGACAT GTTCTACACA GTGTGTAAGG TGGGGAGCGG CTTCACCGAC
GCGGACCTCA AGAAGATGTA TGAAGTGCTG CAGCCGTACA AGATCCCGCA TAGACACCCG
CGGGTGGTCT CGAAGATGAC CCCCGACGTC TGGTTCACCC CCCAGGTGGT GATCGAGGTG
ATCGGGGCGG AGATCACCCT CTCGCCGCTT CACACCTGTT GCCTCGGCGC CGTGAGGCCG
GGGGTGGGCC TCGCCATTAG GTTCCCCAGG TTCACCGGCC GGTACAGAAC CGACAAATCG
CCGGAGCAGG CCACCACGCC GGCAGAGATG GTGGAGCTCT ACAAGAGGCA GAAGAAGGTG
GCTCAGCCCG AGTAG
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| Protein sequence | MQFGELVKTL AAVESTTQRT TMVKLLTSLL KRARPDEVDK IVYFVLGDLK PPWEGVELGV
AEKLCLRAVS KAAGTPLSEL EAVYKRTGDV GEAARRALSA AKRPGLLAFG QQKPLEVSEV
YDTLLKVAKA AGEGAQDMKI SLLASLFARA TPEEAKYIAR FVVGKLRLGV ADMTLLEALS
EAFGVGKEAL ERAYHVWPDM GKLARHVAEG RPLEEVKITP GVPVLPMLAQ RLSSASEILA
KLGGAAVCEY KYDGERAQIH ISGGSVKIFS RRLEDITHAY PDVVKAVKES VAAGEAILEG
EIVAVDPDTG DMLPFQELMH RKRKHEVAAA VESYPAVLNL FDVLYLDGED LTGEPLIYRR
LRLSEVVHET EKVSIARWRL FDDPGEVDVF FHEAVSLGME GLVCKSPTSI YEMGARGWNW
IKYKRDYKSE MIDTVDLVVV GAFYGRGKRA GLYGAFLLAA YDPQTDMFYT VCKVGSGFTD
ADLKKMYEVL QPYKIPHRHP RVVSKMTPDV WFTPQVVIEV IGAEITLSPL HTCCLGAVRP
GVGLAIRFPR FTGRYRTDKS PEQATTPAEM VELYKRQKKV AQPE
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