| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmz1t_3824 |
|---|
| Symbol | |
|---|
| ID | 7874066 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thauera sp. MZ1T |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011662 |
|---|
| Strand | + |
|---|
| Start bp | 4217903 |
|---|
| End bp | 4219357 |
|---|
| Gene Length | 1455 bp |
|---|
| Protein Length | 484 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 643700766 |
|---|
| Product | ribonuclease, Rne/Rng family |
|---|
| Protein accession | YP_002890790 |
|---|
| Protein GI | 237654476 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1530] Ribonucleases G and E |
|---|
| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCATCG AATTCCTCAT CAACTTCACC CCGCAGGAAA CCCGCGTCGC GATCGTCGAG
CAGGGCGTGG TGCAGGAGCT GCACGTCGAG CGCACCGCCA GCCGCGGCAT CGTCGGCAAC
CTCTACCTCG GCAAGGTCGT CCGGGTGCTG CCCGGCATGC AGTCGGCCTT CATCGACATC
GGCCTCGAGC GCACCGCCTT CCTGCACGTG GCCGACATCT GGAGCGACCG CCAGAACGGC
GAGGGTGCGC GTCCGATCGA GAAGATCCTC ACCGAAGGCC AGAGCCTGAT GGTGCAGGTG
CTCAAGGACC CGATCGGCAC CAAGGGCGCA CGCCTGTCCA CCCAGGTCAG CCTCGCCGGC
CGCCTGCTCG TCTACCTGCC GCAGGAAAAG CACATCGGCA TCTCCCAGCG CATCGAGGAC
GAGGCCGGGC GCGAGGCGCT GCGCAGCCGG CTGGTCGCGC TGGTGCCGGA AGACGAGCCA
GGCGGCTTCA TCGTGCGCAC GATGGCCGAA TCCGCCACCG ACGCCGAGCT CGCCGCCGAC
ATCGCCTACC TGCGCAAGCT GTGGCGCGAG ATCTCCGGCT CGACCGTGGG CCTGTTCCCG
CCGAAGCTGC TGCACGAGGA CCTCGGGCTG GGCCAGCGCA CGCTGCGCGA CCTCGTCACC
GACGAGACCT CACGCATCCG CGTCGACTCG CGGGAGAACT TCCAGAAGCT CACCGCCTTC
GCCGCCGAGT ACACGCCCCA GGTGCTGCCG CTGCTCGAGC ACTACAGCGG CGATCGCCCG
CTCTTCGAGC TCTACAGCGT GGAAGAGGAG ATCCAGAAGG CGCTCGCCCG CCGCGTCGAT
CTCAAATCCG GCGGCTACCT GATCATCGAC CAGACCGAGG CGATGACCAC CGTCGACGTC
AACACCGGCG GCTTCGTCGG CGCGCGCAAC TTCGACGACA CCATCTTCAA GACCAACCTC
GAGGCCAGCC AGGCCATCGC CCGCCAGCTG CGCCTGCGCA ACCTCGGCGG CATCATCATC
ATCGACTTCA TCGACATGGA GAACGTCGAG CATCGCGAGA TGGTGCTGGA GGAGTTCCGC
AAGGCGCTGT CGCGCGACCA CACCAAGATG AGCATCAACG GCTTCACCGC GCTCGGCCTG
GTGGAGATGA CGAGGAAGCG CACGCGCGAA TCCCTCGCCC ACCTGCTGTG CGAGCCCTGC
CCCACCTGCA GCGGCCGCGG CGAGGTCAAG ACCGCGCGCA CGGTGTGCTA CGAGATCCTG
CGCGAGCTGC TGCGCGAGGC ACGCCAGTTC AACGCCCGGG AGTTCCGCGT GCTCGCCGCG
CCCAACGTGA TCGACCTCTT CCTCGACGAG GAGAGCCAGT CGCTGGCGAT GCTGTCGGAC
TTCATCGGCA AGAAGGTCTC GCTGCACGCC GAGGGCAGCT ACACCCAGGA GCAGTACGAC
ATCGTGCTGC TGTGA
|
|---|
| Protein sequence | MSIEFLINFT PQETRVAIVE QGVVQELHVE RTASRGIVGN LYLGKVVRVL PGMQSAFIDI
GLERTAFLHV ADIWSDRQNG EGARPIEKIL TEGQSLMVQV LKDPIGTKGA RLSTQVSLAG
RLLVYLPQEK HIGISQRIED EAGREALRSR LVALVPEDEP GGFIVRTMAE SATDAELAAD
IAYLRKLWRE ISGSTVGLFP PKLLHEDLGL GQRTLRDLVT DETSRIRVDS RENFQKLTAF
AAEYTPQVLP LLEHYSGDRP LFELYSVEEE IQKALARRVD LKSGGYLIID QTEAMTTVDV
NTGGFVGARN FDDTIFKTNL EASQAIARQL RLRNLGGIII IDFIDMENVE HREMVLEEFR
KALSRDHTKM SINGFTALGL VEMTRKRTRE SLAHLLCEPC PTCSGRGEVK TARTVCYEIL
RELLREARQF NAREFRVLAA PNVIDLFLDE ESQSLAMLSD FIGKKVSLHA EGSYTQEQYD
IVLL
|
|---|
| |