| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmz1t_3757 |
|---|
| Symbol | |
|---|
| ID | 7873754 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thauera sp. MZ1T |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011662 |
|---|
| Strand | - |
|---|
| Start bp | 4126833 |
|---|
| End bp | 4128671 |
|---|
| Gene Length | 1839 bp |
|---|
| Protein Length | 612 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 643700701 |
|---|
| Product | TonB-dependent receptor plug |
|---|
| Protein accession | YP_002890725 |
|---|
| Protein GI | 237654411 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
|---|
| TIGRFAM ID | [TIGR01779] TonB-dependent vitamin B12 receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATCC GTGTTTCCGC GCTCGCCTCG GCATGCGCGC TCGCCTGTTT CCTCGCACCG
GCCGCTCATG CGGCCGATGC CCAGCTCGGC CACGTCGTCG TGACCGCCAC TCGCCAGCCG
ATCAGTGCCG ATGCGGCCCT GGCCAGCGTG GATGTCATCG AGCGCGACGA AATCGCCCGC
GCGGGGCATT CGAGCCTGCT GGGCCTGCTC TCCTCGCGGC CGGGCGTGCA GATGGCACGC
AATGGCGGTC CTGGTTCGAG CGGCAGCATC TTCATCCGCG GGGCGAACTC CGGACACACG
CTGGTGCTGG TCGATGGGGT GCGCATGGGC TCCGCCACCA GCGGCTCTCC GGTGCTGGAG
ACGATCCCGC TCGAACTCAT CGAGCGTATC GAGATCCTGC GCGGCCCCGG AAGTGCGCTG
TACGGCGCGG ATGCGCTCGG TGGCGTGATC CAGGTGTTCA CCCGCAAGGG GCGCGAGGGC
TTCCAGCCCT CCGTGCGCGT CGGGGCCGGC ACGGACGGCG CGCGCGAGGC GAGCGCCACG
CTCGCGGGTG GAAACGAGCG TCTGCGCTAC AGCCTGACCG CCGGTCACGA GCGCAGCGAC
GGCTTCAACG CAAGGCCGAA TTCGGCGACC GCCGCGGATG CCGACGACGA CGGCTTCCGC
GAGGATTATC TGGGCGCGTC GCTGGTGCTG GACCTGGGCG GCAATGACGA GCTCGGCGCC
AACCTGCTGT ATTCCGACAT GCGCAACTGG TACGACGCGG CACAGCCTTT CGACTCCTAC
CTCGACAAGC GTGCCGAGAC CTTCGGCGCG TATCTGCGCA AGCAGCATTC CGCCGACTGG
GCCAGCACCC TGCGCTTCGG TCACGGGGTG GATGCCCTCG ACAACCAGTC GAACGCGAGC
ACGCGTTCCC GCTTCGATAC CACGCAGCGC CAGTTGAGCT GGCAGCACGA CGTCGCCGTA
GGTGGCGGCT CGCTGATGGC GGCGTACGAG TTTCTGCAGC AGCGCGTGAA GACCACCTCC
GACTTCGAGA AGACGCGTCG CCACATCAAC GCCTTCCTGC TCGGCTGGGG TGGTGAATTC
GACCGCCACA ACGTCCAGCT CAATGCGCGC CACGACCGCA ACTCGCAGTT CGGTGGCAAG
ACCACCGGCG CCGCGGCCTA CGGCTATCGG CTTGCGCCCG AGTGGCGCGC CCATGCCAGC
ATCGGCACGG CGTTCAAGGC GCCGACCTTC AACGATCTGT ACTTCCCGGT GGAGTGCTAC
GGTGCCTGGG GCTGCTTCGG CGGCAATCCG GACCTGGAGC CCGAGGAGGC GCTCAACCGT
GAGCTGGGCG TGGCCTGGGA GCGCAACGGG GTCGGTGTCG ACCTGACCTA TTTCAACAAC
CGCATCAAGA ACCTCATCGA CTGGAGCACC GGCATCGCCT CCAATGTGGG CAGGGCCGAC
ATCCAGGGGA TCGAGGCGGC GCTGTCCGCG ACCCTGGGCG ACTACCGGCT GCGCGCCAGC
GTCGACCTGC TCGACGCGGA GGATGACGAG ACCGGCGATC AGCTCGGCCG CCGCGCGCGC
GTCGGCGGGG CGCTCGCGCT GGAGCGTGCG GTGGGCGCGT GGACCTGGGG TGTGGAGTGG
AACGGCAAGG GGCGGCGCTA TGATCAGGTG CCGAACGCGG TGTCCAATCG CCTCGGCGGC
TACGGTCTGG TCGATGCCTA CGCGCACTAC GCCGTGGCGC GCGACTGGAG CGTCGAAGTT
CGTGCCAACA ATCTACTCGA CAAGGACCAT GAGCTTGCGA AGGGGTTCGC AACACAGGGC
AGGAGTGCCT TCGTCGCGCT GCGCTACGCG ATGCACTGA
|
|---|
| Protein sequence | MKIRVSALAS ACALACFLAP AAHAADAQLG HVVVTATRQP ISADAALASV DVIERDEIAR
AGHSSLLGLL SSRPGVQMAR NGGPGSSGSI FIRGANSGHT LVLVDGVRMG SATSGSPVLE
TIPLELIERI EILRGPGSAL YGADALGGVI QVFTRKGREG FQPSVRVGAG TDGAREASAT
LAGGNERLRY SLTAGHERSD GFNARPNSAT AADADDDGFR EDYLGASLVL DLGGNDELGA
NLLYSDMRNW YDAAQPFDSY LDKRAETFGA YLRKQHSADW ASTLRFGHGV DALDNQSNAS
TRSRFDTTQR QLSWQHDVAV GGGSLMAAYE FLQQRVKTTS DFEKTRRHIN AFLLGWGGEF
DRHNVQLNAR HDRNSQFGGK TTGAAAYGYR LAPEWRAHAS IGTAFKAPTF NDLYFPVECY
GAWGCFGGNP DLEPEEALNR ELGVAWERNG VGVDLTYFNN RIKNLIDWST GIASNVGRAD
IQGIEAALSA TLGDYRLRAS VDLLDAEDDE TGDQLGRRAR VGGALALERA VGAWTWGVEW
NGKGRRYDQV PNAVSNRLGG YGLVDAYAHY AVARDWSVEV RANNLLDKDH ELAKGFATQG
RSAFVALRYA MH
|
|---|
| |