| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmz1t_3585 |
|---|
| Symbol | |
|---|
| ID | 7873090 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thauera sp. MZ1T |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011662 |
|---|
| Strand | + |
|---|
| Start bp | 3930672 |
|---|
| End bp | 3932090 |
|---|
| Gene Length | 1419 bp |
|---|
| Protein Length | 472 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 643700525 |
|---|
| Product | MATE efflux family protein |
|---|
| Protein accession | YP_002890555 |
|---|
| Protein GI | 237654241 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0534] Na+-driven multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCCCCT CCACCTCCGC CTCCCCCACC GGCACCCGTG CCATCGTCGG GCAGCTGCTC
CACCTGGCGT GGCCGATCCT GATCGCCCAG CTGCTGTCGA TGACGATGAT GGTGGCGGAC
ACCGTGATCG CCGGGCGCTA CGGCACCGCG GACCTCGCCG GCGTCGCCAT CGGCAGCAGC
TACTACATCT CGGTGGTGAT GCTGCTCACC GGCACCCTGC AGGCGATCTC GCCGACGATC
GCACACCACG TCGGCGCCGG CCGCCAGGAG GCGATCGCCC CCGCGCTGCA GCAGGGCTTC
TGGCTCGCGC TGCTGCTCGC CGGCCCCGGC ATCGCACTGC TGCTCAACCC GGGCTTCCTG
CTCGAGGCGG CGAGCGTGCC GCCCGCGGTC GCCGCCAAGG CCGCCGACTA CCTCGCCGCG
ACCGCCTTCG GCCTGCCCGC ACTGCTGCTT TACCGCAGCT TCTACGCCTT CAACAACGCG
GTCGGGCGCC CGCGCGTGCT GATGGCGATC AGCGCGATCA CCATGTCTGT CCACATCCCG
CTCGCCTGGG CGCTCACCAA CGGCGCGCTC GGCTTCGCGC CGATGGGCGG CACCGGCTGC
GGCGTATCGA CCGCGACGGT GCACTGGATC GCGCTCAGCT GCGGCTTCGC CTACCTGGTC
TTCAACCCGG CCTACAAACC CTATCGCCTC TTCCACGCCT GGCAGGCGCC GCGCGCGCAG
GCGCTCGGCC AGCTGCTGCG GCTCGGCCTG CCGATGGGGG TGTCGACCTT CATCGACATC
AGCTCCTTCA CCCTGATCGC CATCCTCGCC GCCCGCCTCG GCACCGAGAC GGTGGCCGGG
CACCGCGTCA TCGCCAACTT CACCGGCATG ATCTACATGC TGCCGCTGTC GCTGTCGATC
GCCACCATGG TGCTGGTGGG GCAGTCGGCC GGCGCGCAGG ACTGGCGCCG CGCGCGCCGC
ACCGCGCGGC TGGGGATGAG CCTCGCGCTC GGCTTCTCGC TGCTGGTGGG TGCGTTGCTG
TGGATGCTGC GCGAGCCGCT GGTGGCGTTC TCGTCCGCCG ACCCGGCGGT GCAGGCGGTC
GCGCTCGGGC TGGTGGTATG GCTGCTGCTC TACCAGTGCT TCGACGCCCT GCAGACCGTC
GCCGCCCACG CCCTGCGCGG CTACAAGGTC ACGCTGCTGC CGATGCTGGT GCACAGCCTG
TGCTTCTGGG GCATCGGGCT GGCGGGCGGC TACTGGCTCA GCTTCCACGC CCCCTGGCGC
GCCAGCGCGC CGACGGTGGC CGGCTTCTGG GAAGCCTGCG TCCTGGCGAC GCTGGCCGCC
ACCCTGCTCT TCGGCGCCCT GCTGCGCGCG GTCTCCCGCC GCCACGTGCG CGAAGCAGCC
GTGCAGGAGC GCCGCGAGGC GCGAATGCGG CGGTGGTGA
|
|---|
| Protein sequence | MPPSTSASPT GTRAIVGQLL HLAWPILIAQ LLSMTMMVAD TVIAGRYGTA DLAGVAIGSS
YYISVVMLLT GTLQAISPTI AHHVGAGRQE AIAPALQQGF WLALLLAGPG IALLLNPGFL
LEAASVPPAV AAKAADYLAA TAFGLPALLL YRSFYAFNNA VGRPRVLMAI SAITMSVHIP
LAWALTNGAL GFAPMGGTGC GVSTATVHWI ALSCGFAYLV FNPAYKPYRL FHAWQAPRAQ
ALGQLLRLGL PMGVSTFIDI SSFTLIAILA ARLGTETVAG HRVIANFTGM IYMLPLSLSI
ATMVLVGQSA GAQDWRRARR TARLGMSLAL GFSLLVGALL WMLREPLVAF SSADPAVQAV
ALGLVVWLLL YQCFDALQTV AAHALRGYKV TLLPMLVHSL CFWGIGLAGG YWLSFHAPWR
ASAPTVAGFW EACVLATLAA TLLFGALLRA VSRRHVREAA VQERREARMR RW
|
|---|
| |