Gene Tmz1t_3338 details

Gene Information

• Locus tag: Tmz1t_3338
• Symbol: rplC
• ID: 7874236
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thauera sp. MZ1T
• Kingdom: Bacteria
• Replicon accession: NC_011662
• Strand: -
• Start bp: 3642949
• End bp: 3643587
• Gene Length: 639 bp
• Protein Length: 212 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 643700272
• Product: 50S ribosomal protein L3
• Protein accession: YP_002890310
• Protein GI: 237653996
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0087] Ribosomal protein L3
• TIGRFAM ID: [TIGR03625] 50S ribosomal protein L3, bacterial

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.00000254045
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTCTAG GCCTTGTTGG ACGCAAGGTC GGCATGACTC GCATCTTCGC CGAGGATGGC 
AAGACCATCC CGGTGACGGT GCTTGACGTG TCGGATAATC GTGTGTCCCA GATCAAGACG 
ATCGACACCG ACGGCTACGC CGCGGTGCAG ATTGCGTATG GCAAGCGCCG CGCCAGCCGG 
ATCACCAAGC CGGTCGCGGG TCATCTTGCA AAGGCGGGCG TCGAGCCCTG CCGCGGCATC 
AAGGAATTCC GCGTCGAGGC CGAGCAGGCC GGCAGCATGA ATGCCGGCGA TGCGGTCGGT 
GCGGATCTCT TTCAGGTCGG TCAAAAGGTT GACGTTACGG GTGTGACGAT CGGCAAGGGC 
TTCTCGGGTC CGATCAAGCG TCACAACTTC TCGTCGAACC GCGCCTCGCA CGGTAACTCG 
ATCTCGCACA ACTCCCCCGG CTCCATCGGC ATGGCCCAGG ATCCGGGTCG TGTGTTCCCC 
GGCAAGCGCA TGGCGGGCCA GTACGGCAAC GTCCAGCGCA CCACGCAGGG GCTGGAGATC 
GTTCGTGTGG ACGTCGAGCG CCAGCTCCTT CTCGTGAAGG GTGCGGTGCC GGGTGCCAAG 
GGTGGCGACG TCGTCGTCCG TCCGGCGGTC AAGGCCTGA 

 

Protein sequence

MSLGLVGRKV GMTRIFAEDG KTIPVTVLDV SDNRVSQIKT IDTDGYAAVQ IAYGKRRASR 
ITKPVAGHLA KAGVEPCRGI KEFRVEAEQA GSMNAGDAVG ADLFQVGQKV DVTGVTIGKG 
FSGPIKRHNF SSNRASHGNS ISHNSPGSIG MAQDPGRVFP GKRMAGQYGN VQRTTQGLEI 
VRVDVERQLL LVKGAVPGAK GGDVVVRPAV KA