Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tmz1t_3002 |
Symbol | |
ID | 7874392 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thauera sp. MZ1T |
Kingdom | Bacteria |
Replicon accession | NC_011662 |
Strand | - |
Start bp | 3253383 |
End bp | 3254072 |
Gene Length | 690 bp |
Protein Length | 229 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 643699923 |
Product | pseudouridine synthase |
Protein accession | YP_002889978 |
Protein GI | 237653664 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.549118 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGATTTGC CGAAACGAGT GCCCAAGTGC GAGCCTTCAT CGGGTGTAAA AAAATCCGAC ACTTCTGCCG AAGGACGAGC TGAGACACGC CTCTTGCTGC TCAACAAGCC GTTCGGCGTG CTGTGCCAGT TCACCGACGA AGCCGGTCGC CGCACGCTGA AGGACTACGT GGAGGTGCCC GGTGTCTATG CCGCGGGCCG CCTCGATGCC GACAGCGAGG GCCTGGTGCT GCTCACCGGC GACGGTGCCC TGCAGCACCG CATTGCCGAT CCGCGCCACA AGCTGGCCAA GACCTATCTG GTGCAGGTGG AGGGGGAGAT CGACGAGGCC GCGCTGGCGA TCCTGCGTGC GGGGGTAGAT CTGGGGGACT TCCGCAGCTT GCCGTGCGCC GCGCGCCGCA TGCCGGCGCC CGACTGGCTG TGGCCGCGCG ATCCCCCCGT GCGCTTTCGC AAGTCGGTGC CGACGAGTTG GATCGAGATC GTGCTGTGCG AGGGCAAGAA CCGCCAGGTA CGCCGGATGA CGGCCAAGGT CGACCATCCC ACGTTGCGGC TGGTTCGGGT CGCAATCGGG CCCTGGACCT TGGCCGGGCT GGGCGTGGGC GAGTGGCGCG AGCTGGCGGG CGCGGAAATT GCGGAGGTCC TGCCCGCTGG TGCTCCGGCG GCGGCGCGCA GGGGCCGGTT GCGGCGCTAG
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Protein sequence | MDLPKRVPKC EPSSGVKKSD TSAEGRAETR LLLLNKPFGV LCQFTDEAGR RTLKDYVEVP GVYAAGRLDA DSEGLVLLTG DGALQHRIAD PRHKLAKTYL VQVEGEIDEA ALAILRAGVD LGDFRSLPCA ARRMPAPDWL WPRDPPVRFR KSVPTSWIEI VLCEGKNRQV RRMTAKVDHP TLRLVRVAIG PWTLAGLGVG EWRELAGAEI AEVLPAGAPA AARRGRLRR
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