Gene Tmz1t_3002 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTmz1t_3002 
Symbol 
ID7874392 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThauera sp. MZ1T 
KingdomBacteria 
Replicon accessionNC_011662 
Strand
Start bp3253383 
End bp3254072 
Gene Length690 bp 
Protein Length229 aa 
Translation table11 
GC content68% 
IMG OID643699923 
Productpseudouridine synthase 
Protein accessionYP_002889978 
Protein GI237653664 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases 
TIGRFAM ID[TIGR00093] pseudouridine synthase 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.549118 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATTTGC CGAAACGAGT GCCCAAGTGC GAGCCTTCAT CGGGTGTAAA AAAATCCGAC 
ACTTCTGCCG AAGGACGAGC TGAGACACGC CTCTTGCTGC TCAACAAGCC GTTCGGCGTG
CTGTGCCAGT TCACCGACGA AGCCGGTCGC CGCACGCTGA AGGACTACGT GGAGGTGCCC
GGTGTCTATG CCGCGGGCCG CCTCGATGCC GACAGCGAGG GCCTGGTGCT GCTCACCGGC
GACGGTGCCC TGCAGCACCG CATTGCCGAT CCGCGCCACA AGCTGGCCAA GACCTATCTG
GTGCAGGTGG AGGGGGAGAT CGACGAGGCC GCGCTGGCGA TCCTGCGTGC GGGGGTAGAT
CTGGGGGACT TCCGCAGCTT GCCGTGCGCC GCGCGCCGCA TGCCGGCGCC CGACTGGCTG
TGGCCGCGCG ATCCCCCCGT GCGCTTTCGC AAGTCGGTGC CGACGAGTTG GATCGAGATC
GTGCTGTGCG AGGGCAAGAA CCGCCAGGTA CGCCGGATGA CGGCCAAGGT CGACCATCCC
ACGTTGCGGC TGGTTCGGGT CGCAATCGGG CCCTGGACCT TGGCCGGGCT GGGCGTGGGC
GAGTGGCGCG AGCTGGCGGG CGCGGAAATT GCGGAGGTCC TGCCCGCTGG TGCTCCGGCG
GCGGCGCGCA GGGGCCGGTT GCGGCGCTAG
 
Protein sequence
MDLPKRVPKC EPSSGVKKSD TSAEGRAETR LLLLNKPFGV LCQFTDEAGR RTLKDYVEVP 
GVYAAGRLDA DSEGLVLLTG DGALQHRIAD PRHKLAKTYL VQVEGEIDEA ALAILRAGVD
LGDFRSLPCA ARRMPAPDWL WPRDPPVRFR KSVPTSWIEI VLCEGKNRQV RRMTAKVDHP
TLRLVRVAIG PWTLAGLGVG EWRELAGAEI AEVLPAGAPA AARRGRLRR