Gene Tmz1t_2870 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTmz1t_2870 
Symbol 
ID7873772 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThauera sp. MZ1T 
KingdomBacteria 
Replicon accessionNC_011662 
Strand
Start bp3106097 
End bp3108127 
Gene Length2031 bp 
Protein Length676 aa 
Translation table11 
GC content74% 
IMG OID643699791 
ProductGAF modulated sigma54 specific transcriptional regulator, Fis family 
Protein accessionYP_002889846 
Protein GI237653532 
COG category[K] Transcription
[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG3284] Transcriptional activator of acetoin/glycerol metabolism 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.360055 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGTCGATA ACACGATGCG TGCCGCGCAG GCGGCGGTGG TCGAGTCGCT GCGCAGGCAG 
TTTTCCGCCT CCGGCCAGGT GCCCGACGCG GGCCTGCCGG TGCCGGTGCT GCGCTCCTGG
GCGCGCTGCC AGCGCCTGGG ATTGGACATG GGCGAGCGCG TGCGCCCGCC CAGCACCACG
CGGGGCGACC TGATGGTGGC GCGCGAGCGC AGCGCGGCCC TGCTCGCGCA CGCCAGCGGC
GTCATGGAGC ACCTTCACGA ACAGATCCGT TCCTCGGGCA GCATGGTGCT GCTCGCCGAC
GCCAGCGGGA TGATCCTGCA CGGCATCGGC GACCCCGCCT TCGTCGACCG CGCCAACCGC
GTCGCCCTGC AGGCGGGCGC GAACTGGAGC GAATGCGAGC GCGGCACCAA CGCGATCGGC
GCCACCCTGA TCGAGCGTGC GCCGGTCGAG GTGCTCGGCG CCGAGCACTA CCTCGACTGC
AACGGCGTGC TCACCTGCAG CGCGGCGCCG ATCTTCGACT GGCGCGGCGA GCTGCTCGGC
GCGCTCGACA TCTCGGGCGA CCACCGCAGC CACCAGCCCC ACACGCTCGG ACTCGCGCGC
ATGGGGGTGC GCCTGGTCGA ACGCCGCTTG TTCGAGAGCG AACACGCGCG CCATGCGCTG
CTCTCCTTCC ATCCGCGTCC CGAGGGCGTC GGCGGCCTGC AGGAGGGTCT GCTGGCGATC
GATGCGGATG GCGAGATCGT CGCCGCCGAC CGCCAGGCGC GCGCGCTGCT GGGGGTCGAA
GAGCGCCGGG TGGCGGGCCT GGGGAATTTC TCCAACCTGT TCCGGGGCGG CTTCGGCACG
CTGATCGGGC GCGCGGCGCG CGATCCGGCG GCGCTGGTCG AACTCGAGCT GCGTTCGGGC
GCACGCATCC ACGCGCGCCT GCGGCTGAGC CCGGCCTGGC AGGCCGGCGC GCAGTCGGCC
CCGGCCGGCA CGGCCCGCGT TGCCGCCGCC CCCGATCCCT CACGCTCGGC GCGCCACAGG
ACCACCCTCG AGACCCTGTC CACCGGCGAC CCCGCGCTGC AGTTCGTGCT CGACCGCTGC
GCGCGCATCG TCGGGCGCAG CATCCCGATC CTGATCCAGG GCGAGTCCGG CTCCGGCAAG
GAACTCCTCG CGCGCGCCTG CCACAACAGC GGTCCGCGTG CGGATGGCCC CTTCGTCGCG
GTCAACTGCG CGGCCATCCC CGAGAACCTG ATCGAGTCCG AGCTCTTCGG CTACGTCGGC
GGCGCCTTCA CCGGCGCGCG CAAGGAGGGT GCGATCGGCC GCATCCAGCA GGCCCATGGC
GGCACGCTCT TCCTCGACGA GATCGGCGAC ATGCCGCTGG CGATGCAGGC GCGGCTGCTG
CGCGTGCTGC AGGAGCGCTG CGTGCAGCCG GTGGGCGCGG GCTCCGCGGT ACCGGTCGAT
ATCGCGCTGC TGTGCGCGAC CCACCGCCAG CTCGGCGAGC AGGTCAAGGC CGGGCGCTTC
CGCGAGGATC TCTACTACCG GGTCAACGGC CTCGGCGTGC AGTTGCCGCC ACTGCGCGCG
CGCAGCGACC TGCAGGGCAT CGTGCGCCGC CTGCTTGACG GCAGCAGCCA CCACCCCGAG
CCCGCGCGCG TCGACGTCGC GCCGGAGACG ATGGCGATCC TCGCGGCCTA CCCCTGGCCG
GGCAACATCC GCCAGCTGCA GAACGTGCTC GAGGTCGCGC TCGCGTTGCT CGACGAGGGC
GAGACGCGCA TCCTGCCGGT GCATCTGCCC GAGGAAGTGC TGCAGGCGGT CGGCGATGCG
CCGGCGCTCG CCCCGTCGGC AGGGGCCGAA CGCGGCGAGC CGCGTTCCGC GCGGCCCGCC
GACGATCCCG ACCCGCTGCC GCTGCCGCTA CCGCTGCGGC GCGCGCGCGC GCTCGACGAC
GACGCCATCC GCGCCGCGAT CGAGCGCTTC GACGGCAACC TCTCCGCCGC CGCCCGTCAC
CTCGGCGTCG CGCGCAACAC GCTTTATCGG CGGATGGGAC GGCCGTTCTG A
 
Protein sequence
MVDNTMRAAQ AAVVESLRRQ FSASGQVPDA GLPVPVLRSW ARCQRLGLDM GERVRPPSTT 
RGDLMVARER SAALLAHASG VMEHLHEQIR SSGSMVLLAD ASGMILHGIG DPAFVDRANR
VALQAGANWS ECERGTNAIG ATLIERAPVE VLGAEHYLDC NGVLTCSAAP IFDWRGELLG
ALDISGDHRS HQPHTLGLAR MGVRLVERRL FESEHARHAL LSFHPRPEGV GGLQEGLLAI
DADGEIVAAD RQARALLGVE ERRVAGLGNF SNLFRGGFGT LIGRAARDPA ALVELELRSG
ARIHARLRLS PAWQAGAQSA PAGTARVAAA PDPSRSARHR TTLETLSTGD PALQFVLDRC
ARIVGRSIPI LIQGESGSGK ELLARACHNS GPRADGPFVA VNCAAIPENL IESELFGYVG
GAFTGARKEG AIGRIQQAHG GTLFLDEIGD MPLAMQARLL RVLQERCVQP VGAGSAVPVD
IALLCATHRQ LGEQVKAGRF REDLYYRVNG LGVQLPPLRA RSDLQGIVRR LLDGSSHHPE
PARVDVAPET MAILAAYPWP GNIRQLQNVL EVALALLDEG ETRILPVHLP EEVLQAVGDA
PALAPSAGAE RGEPRSARPA DDPDPLPLPL PLRRARALDD DAIRAAIERF DGNLSAAARH
LGVARNTLYR RMGRPF