| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmz1t_1189 |
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| Symbol | |
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| ID | 7083849 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thauera sp. MZ1T |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011662 |
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| Strand | - |
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| Start bp | 1317171 |
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| End bp | 1319171 |
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| Gene Length | 2001 bp |
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| Protein Length | 666 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 643698205 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_002354844 |
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| Protein GI | 217969610 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.920411 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCACGCG AAAAAGCCAA GGACCCACGC AAGGACGCCC CCGCGAAGGG CCGCCCTGCC
AAGGCCAAGG ACAAGGCAGC CCCGGTGGTC GAAAGCCCCG CCGCCACCCC GCTCGACGCG
GAGGTGCGCC GCACCCGGCT GAAGACGCTG ATCACGCTCG GCAAGGAACG CGGCTATCTC
ACCTACGCCG AGATCAGCGA CCACCTCCCC GACGATGTGG CCGATGCCGA GCAGATCGAA
GGCATCATCG CCACCTTCAA CAACATGGGC ATCCAGGTCT ATGACGAGGC GCCGGCCGCC
GAAGACCTGC TCATGTCGGA CAGCGTCGCC ACCAACGTGG ACGAGGACGT CGCCGAAGAG
GAAGCCGAAC AGGCGCTGTC CTCGGTCGAC TCCGAATTCG GCCGCACCAC CGACCCGGTG
CGCATGTACA TGCGCGAGAT GGGCACGGTC GAGCTGCTCA CCCGCGAGGG CGAGATCGAG
ATCGCCAAGC GCATCGAGGA CGGCCTCAAG CACATGGTGC AGGCCATCTC CGCCTGCCCG
ACCACGATCG CCGAGATGCT CGGCATCGTC GACCGCATCG CCGCCGACGA TGCCAAGATC
GACGAGCTGG TCGACGGCCT GATCGACCCC AACGCCGGCA GCGCCGAGGA AGCGGCCGCG
GAGGAGGAGT CCGCCGACGA GGACACCGAG GCCGAAGAGG ACGAGGGCGC GGAGGACGAG
GACGAGGGCG ACGACGAGGA AGACAGCGCC GAGAGCGCCG AGCGCGCCAA TGCCGCCTCG
CTGCTGCAAC TCAAGAACGA CGCGCTCGCC CGCTTCGACG TCATCCGCGG GCTGTACGAG
AAGAAGATGC AGGCGCTCGA GAAGCGTGGC TCGCAGGACC TCTCCTACCT CGCGCTGCAG
CAGCAGATCT CCGACGAGCT GCTCAACATC CGCTTCACCG CCAAGGCCAT CGAGAAGCTG
TGCGACTCGG TGCGCCACAT GGTCGAGCAG GTGCGCAGCC ACGAGCGCCA GATCCTGCAG
CTGTGCGTGG ATCGCGCCGG CATGCCGCGC CAGCACTTCA TCAAGGTGTT CCCCGGCCAG
GAAGTGAACC TCGACTGGCT CAAGGACGAG ATCGCCGCCG GCAAGAACTA CGCCGACGGC
CTGATGCGCA TCCACCCCGC GGTGCTCGAG GAGCAGCAGA AGCTCATCGA CCTGCAGGAC
CGCATCGGCA TCCCGCTCAA GGAACTCAAG GACATCAACC GCCAGATGTC CACCGGCGAA
GCCAAGATGC GTCGCGCCAA GCGCGAGATG ACCGAGGCCA ACCTGCGCCT GGTGATCTCG
ATCGCGAAGA AGTACACCAA CCGCGGCCTG CAGTTCCTCG ACCTCATCCA GGAAGGCAAT
ATCGGCCTGA TGAAGGCGGT GGACAAGTTC GAATACCGCC GCGGCTACAA GTTCTCGACC
TATGCCACGT GGTGGATCCG CCAGGCCATC ACGCGCTCGA TCGCCGACCA GGCGCGCACC
ATCCGCATCC CGGTGCACAT GATCGAGACG ATCAACAAGA TGAACCGCAT CAGCCGCCAG
ATCCTGCAGG AGACCGGTCA GGAGCCGGAT CCCGCGACGC TGGCCGAGAA GATGGAGATG
CCCGAGGAGA AGATCCGCAA GATCATGAAG ATCTCCAAGG AGCCGATCTC CATGGAGACG
CCGATCGGCG ACGACGACGA CTCCCACCTG GGCGACTTCA TCGAGGACAC CGCCACCCTG
GCCCCGGCCG AGGCGGCGAT GTACTCCGGC CTGCGCGACG CCACCTGCGA GGTGCTCGAC
TCGCTGACCC AGCGCGAGGC CAAGGTGCTG CGCATGCGCT TCGGCATCGA GATGAACACC
GACCACACGC TGGAAGAGGT CGGCAAGCAG TTCGACGTCA CCCGCGAGCG CATCCGCCAG
ATCGAAGCCA AGGCCCTGCG CAAGCTGCGC CACCCGAGCC GCTCCGAGAA GCTGCGCAGC
TTCCTCGACA GCGACGCGTA A
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| Protein sequence | MAREKAKDPR KDAPAKGRPA KAKDKAAPVV ESPAATPLDA EVRRTRLKTL ITLGKERGYL
TYAEISDHLP DDVADAEQIE GIIATFNNMG IQVYDEAPAA EDLLMSDSVA TNVDEDVAEE
EAEQALSSVD SEFGRTTDPV RMYMREMGTV ELLTREGEIE IAKRIEDGLK HMVQAISACP
TTIAEMLGIV DRIAADDAKI DELVDGLIDP NAGSAEEAAA EEESADEDTE AEEDEGAEDE
DEGDDEEDSA ESAERANAAS LLQLKNDALA RFDVIRGLYE KKMQALEKRG SQDLSYLALQ
QQISDELLNI RFTAKAIEKL CDSVRHMVEQ VRSHERQILQ LCVDRAGMPR QHFIKVFPGQ
EVNLDWLKDE IAAGKNYADG LMRIHPAVLE EQQKLIDLQD RIGIPLKELK DINRQMSTGE
AKMRRAKREM TEANLRLVIS IAKKYTNRGL QFLDLIQEGN IGLMKAVDKF EYRRGYKFST
YATWWIRQAI TRSIADQART IRIPVHMIET INKMNRISRQ ILQETGQEPD PATLAEKMEM
PEEKIRKIMK ISKEPISMET PIGDDDDSHL GDFIEDTATL APAEAAMYSG LRDATCEVLD
SLTQREAKVL RMRFGIEMNT DHTLEEVGKQ FDVTRERIRQ IEAKALRKLR HPSRSEKLRS
FLDSDA
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