| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmz1t_0003 |
|---|
| Symbol | gyrB |
|---|
| ID | 7085101 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thauera sp. MZ1T |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011662 |
|---|
| Strand | + |
|---|
| Start bp | 2972 |
|---|
| End bp | 5473 |
|---|
| Gene Length | 2502 bp |
|---|
| Protein Length | 833 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 643697053 |
|---|
| Product | DNA gyrase subunit B |
|---|
| Protein accession | YP_002353702 |
|---|
| Protein GI | 217968468 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit |
|---|
| TIGRFAM ID | [TIGR01059] DNA gyrase, B subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGAAC CGCAAGACCA GCCCACCGCA TCCGCCAAGG CGCACGAAGA CTACGACGAA
ACCAGCATCC AGCAGCTCGA AGGACTGGAA GCGGTGCGCA AGCGCCCCGG CATGTACATC
GGCGACACCT CCGACGGCAC CGGCCTGCAC CACATGGTCT TCGAGGTCGT GGACAACTCC
ATCGACGAGG CCCTGGCCGG TCACTGCGAC GACATCGTCA TCACCATCCA CGCCGACAAC
TCGATCTCGG TCACCGACAA CGGCCGCGGC ATCCCGGTCG GCGTCAAGAT GGACGACAAG
CACGAGCCCA AGCGCAGCGC CGCCGAGATC GTCATGTGCG TGCTGCACGC CGGCGGCAAG
TTCAACCAGA ACAGCTACAA GGTCTCCGGC GGCCTGCACG GCGTGGGCGT GTCCTGCGTG
AATGCGCTGT CCAAGTGGAT GAACGTCACC GTCGCCCGCG ACGGCAAGCG CCACCTGCTC
GAGTTCGAGC GCGGCAAGCC GCAGAACCGC GTCATCGAGG TCGTGGATGG CGTCGAGGTC
AGCCCGGCGC GCGTCATCGG CGAGACCACC AAGCGCGGCA CCAAGGTGCA TTACCTGGCC
GACGAGGAGA TCTTCGGCAC CATCGAGTAC CACTACGACA TCCTCGCCAA GCGCCTGCGC
GAGCTCTCCT TCCTCAACAA CGGCGTCAAG ATCCGCCTCA TCGACCAGCG CACCGGCAAG
GAGGAAGACT TCGCCTTCGC CGGCGGCGTC AAGGGCTTCG TCGAGTACAT CAACCGCGCA
AAGACGGTGC TGCACCCCAA CGTCTTCTAC GCCACCGGCA CCACCCGCAT CCCCACCGGT
CACGGCCACG ACGCCGAGCT CGCGGTCGAG GTCGCCATGC AGTGGAACGA CAGCTACCAG
GAACAGGTGC TGTGCTACAC CAACAACATC CCGCAGGCCG ACGGCGGCAC CCACCTCACC
GGCCTGCGCG CGGCGATGAC GCGGGTGATA AACAAGTACA TCGAAGAAAA CGAGATCGCC
AAGAAGGCCA AGGTCGACAT CACCGGTGAC GACATGCGCG AAGGCCTGGC CTGCGTGCTC
TCGGTCAAGA TGCCCGACCC CAAGTTCGCC AGCCAGACCA AGATGAAGCT GGTGTCGTCC
GAGGCCCGCC CGGCGGTGGA AGAAGTCGTC GCCAGCAAGC TCGGCGACTT CCTGCTCGAG
AACCCGATCG ACGCCAAGAC CATCTGCAAC AAGATCGTCG AAGCCGCCCG TGCCCGCGAC
GCCGCCCGCA AGGCGCGCGA GATGACGCGC CGCAAGGGCG TGCTCGACGG CGTCGGCCTG
CCCGGCAAGC TCGCCGACTG CCAGGAAAAG GACCCCGCGC TGTGCGAGCT CTACCTCGTC
GAGGGCGACT CCGCAGGCGG CTCCGCCAAG CAGGGCCGCG ACCGCAAGTT CCAGGCGATC
CTGCCGCTCA AGGGCAAGAT CCTCAACGTC GAGAAGGCGC GCTTCGACAA GCTGCTGCAG
AGCCAGGAGA TCGCCACCCT CATCACCGCG CTCGGCACCA GCATCGGCAA GGACGACTAC
AAGCCCGAGA AGCTGCGCTA CCACCGCATC ATCCTGATGA CCGACGCCGA CGTCGACGGC
GCCCACATCC GCACCCTGCT GCTCACCTTC TTCTACCGCC AGATGCCCGA GCTGGTCGAG
CGCGGCCACA TCTACATCGC CCAGCCGCCG CTGTACAAGA TCAAGCACGG CAAGAGCGAG
ATGTACATCA AGGACGACAG CGAGCTCTCC AACCACCTGC TGCGCCTCGC CCTCGACGGC
GCCGTGCTGG TGCCGCGCGA AGGCGCCGAT CCGATCAGCG AAGAGGCCCT CGGCGGCCTG
GCGCGCACCT ACCTGCTCGC CGAAGCCGTC ACCCGGCGCC TGGCCAGCTA CATCGACCCC
GAAGTGCTGC AGGTGATGCT GGCGCACGAC ATCGAAGTCA GCCTCGACGA CGAAGCCGCC
GCCCGCGCCT CGGCCGAGCG CATCCAGCCC CACCTGCCCG AAGGCCTGCA GATCTACGCC
GAATACCACG ACGAAGCCGA GGGCTGGCGC CTCACCATCG AGCGCCTGCA CCACGGCAAC
CGCAAGTTCG GCTGGGTCGA GCACGACTTC CTCGTCTCCG GCGACTACCG CGCCATCCGC
AACGCCGCCG AAGCCATCTC CGGCCTCATC GGCCCCGGCG CCGAGATCCG CCGCGGCGAA
AAGCGCCAGA CCGTCTCCCG CTTCGCCGAC GCCATCAAGT GGATGCTCGC CGACGTCGAA
CGCGGCATCA CCAAGCAGCG CTACAAGGGT CTGGGCGAGA TGAACCCCGA GCAGCTGTGG
GAGACCACCA TGGACCCCGC GGTGCGCAGG CTGCTGCGCG TGCAGATCGA CGACGCGATC
GCGGCGGACG AGATCTTCAC CACGCTGATG GGCGACAACG TCGAGCCGCG CAGGGCGTTC
ATCGAGGGCA ACGCGCTGTA TGCGCAGAAC ATCGATGTGT GA
|
|---|
| Protein sequence | MSEPQDQPTA SAKAHEDYDE TSIQQLEGLE AVRKRPGMYI GDTSDGTGLH HMVFEVVDNS
IDEALAGHCD DIVITIHADN SISVTDNGRG IPVGVKMDDK HEPKRSAAEI VMCVLHAGGK
FNQNSYKVSG GLHGVGVSCV NALSKWMNVT VARDGKRHLL EFERGKPQNR VIEVVDGVEV
SPARVIGETT KRGTKVHYLA DEEIFGTIEY HYDILAKRLR ELSFLNNGVK IRLIDQRTGK
EEDFAFAGGV KGFVEYINRA KTVLHPNVFY ATGTTRIPTG HGHDAELAVE VAMQWNDSYQ
EQVLCYTNNI PQADGGTHLT GLRAAMTRVI NKYIEENEIA KKAKVDITGD DMREGLACVL
SVKMPDPKFA SQTKMKLVSS EARPAVEEVV ASKLGDFLLE NPIDAKTICN KIVEAARARD
AARKAREMTR RKGVLDGVGL PGKLADCQEK DPALCELYLV EGDSAGGSAK QGRDRKFQAI
LPLKGKILNV EKARFDKLLQ SQEIATLITA LGTSIGKDDY KPEKLRYHRI ILMTDADVDG
AHIRTLLLTF FYRQMPELVE RGHIYIAQPP LYKIKHGKSE MYIKDDSELS NHLLRLALDG
AVLVPREGAD PISEEALGGL ARTYLLAEAV TRRLASYIDP EVLQVMLAHD IEVSLDDEAA
ARASAERIQP HLPEGLQIYA EYHDEAEGWR LTIERLHHGN RKFGWVEHDF LVSGDYRAIR
NAAEAISGLI GPGAEIRRGE KRQTVSRFAD AIKWMLADVE RGITKQRYKG LGEMNPEQLW
ETTMDPAVRR LLRVQIDDAI AADEIFTTLM GDNVEPRRAF IEGNALYAQN IDV
|
|---|
| |