Gene Tmel_1869 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTmel_1869 
Symbol 
ID5297414 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermosipho melanesiensis BI429 
KingdomBacteria 
Replicon accessionNC_009616 
Strand+ 
Start bp1854282 
End bp1854911 
Gene Length630 bp 
Protein Length209 aa 
Translation table11 
GC content24% 
IMG OID640770137 
Producthypothetical protein 
Protein accessionYP_001307088 
Protein GI150021734 
COG category[S] Function unknown 
COG ID[COG1738] Uncharacterized conserved protein 
TIGRFAM ID[TIGR00697] conserved hypothetical integral membrane protein 


Plasmid Coverage information

Num covering plasmid clones4 
Plasmid unclonability p-value0.000517299 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAAAAAT ATTATGAAAA ACTAATGCTA CTATCAAGTT TGTTTGTTTC TGTTATAATA 
ATCTCAAACA TTATTGCTGG AAAATTAGTA AATATTGGTC CTTTTGTTAT TACGCTTTCA 
GTTTTAATAT ATCCTGTAAG CTTTGGAATT TCAAATATCA TTTTTGAAAT TTACGGGGAA 
AAAATAATCA AAAAAGTTAT TCTAATTGGG TTTATCGCTT CAATAATTTT GGCAATTTAT 
TCTTTTATTG TTATCCTTTA TCCACCTTCA CAAATCTTCG ATAAAAATGA ATCTTATGTC 
ACTGTTTTTA ACAACACGCC AAGAATAATT TTAGCAAGTT TTTTGGCATA CCTTTCTGCA 
CAATTTTCAA ACATTTGGAT TTTTAAATTT TTAAAAAATT TAAAAGTAAA TAATCTAACA 
ATTAGAAATA CAATTTCAAT GATAATTACT CAATTTATAG ATTCTGTAGT TTTTGTAGGT 
ATTTCCTTTT TAGGAAATTA TAGTTTTGAT ACAATAATAA GCATGATCTT ATCACAGTAT 
ATTATAAAAC TCGTTATTTC CATCCTAAAT GGTCCAATAA TAAACTTTAG TGTCAAAAGA 
ATAAAAAATA CACTAGTTTA TGATAAATAA
 
Protein sequence
MEKYYEKLML LSSLFVSVII ISNIIAGKLV NIGPFVITLS VLIYPVSFGI SNIIFEIYGE 
KIIKKVILIG FIASIILAIY SFIVILYPPS QIFDKNESYV TVFNNTPRII LASFLAYLSA 
QFSNIWIFKF LKNLKVNNLT IRNTISMIIT QFIDSVVFVG ISFLGNYSFD TIISMILSQY 
IIKLVISILN GPIINFSVKR IKNTLVYDK