Gene Tmel_1558 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTmel_1558 
Symbol 
ID5297080 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermosipho melanesiensis BI429 
KingdomBacteria 
Replicon accessionNC_009616 
Strand+ 
Start bp1546269 
End bp1546715 
Gene Length447 bp 
Protein Length148 aa 
Translation table11 
GC content32% 
IMG OID640769835 
ProductBadM/Rrf2 family transcriptional regulator 
Protein accessionYP_001306788 
Protein GI150021434 
COG category[K] Transcription 
COG ID[COG1959] Predicted transcriptional regulator 
TIGRFAM ID[TIGR00738] rrf2 family protein (putative transcriptional regulator) 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCCGTAA CAATGAAAAG TGAGTATGCA TTGAGACTAC TACTTCTTTT ATCTTTAGAT 
GAAAAACTGG TAAGTACGAG AGAGTTAATA TCAAAGTGTA AGGCTGATAT ACCTTATGAA 
TTTGCTCAAA AGATTTTGTC AAGGCTTGTT TCATCTGGAA TTTTATCCTC ATCTAGGGGA 
AAATTTGGAG GGTATAAATT AACAAAAAAG CCGTCAGAGA TCACAATTTA TGATATAGTT 
AGTGCTGTTG ATGATATTTC AACTGTAATT ACATGTTTTG TTGAGCCTGG TAAAATGAAG 
TTAGAACCTG AAATTTGCAC AGTAAATGAA ATTTGGCAGA TTGTCATGGA AAAGTTTTCA 
AAATCATTAA TGTCTGTTAC GTTGGAAGAT TTAAAGAAGT CATATTTGAA AAAATGTGAG 
GAGTTTGGAA GGAGGAATAA ATTATAA
 
Protein sequence
MAVTMKSEYA LRLLLLLSLD EKLVSTRELI SKCKADIPYE FAQKILSRLV SSGILSSSRG 
KFGGYKLTKK PSEITIYDIV SAVDDISTVI TCFVEPGKMK LEPEICTVNE IWQIVMEKFS 
KSLMSVTLED LKKSYLKKCE EFGRRNKL