Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tmel_1511 |
Symbol | |
ID | 5296747 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thermosipho melanesiensis BI429 |
Kingdom | Bacteria |
Replicon accession | NC_009616 |
Strand | - |
Start bp | 1496741 |
End bp | 1498729 |
Gene Length | 1989 bp |
Protein Length | 662 aa |
Translation table | 11 |
GC content | 29% |
IMG OID | 640769788 |
Product | DNA ligase, NAD-dependent |
Protein accession | YP_001306741 |
Protein GI | 150021387 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0217425 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAACA TAAAAGAGGA AATTGAAAGA TTACGAAAAG AAATAGAATA CCACAACTAC CGATATTATG TTCTAGCAGA TCCAATAATA AGTGATGAAG AATATGACAG ATTATTAAAA AAACTAATAG AATTAGAAAA AAAATACCCG AAATTTTCTT CTCCAAATTC CCCAACGCAA AAGGTTGGAG GAGGAGTTAT TTCAGGATTT GAAAAAGTTG AGCATACAAC TCCAATGTTA AGTCTTGATA ATACATACAA CGAAACAGAA ATAAAAGAAT TTGACAATAG AATAAAAAGG CTATTAAACA GAAATTCTGT TGAATATGTT TGTGAATTAA AAATCGATGG TATCTCCGTA TCAATAAGAT ATGAAAATGG TGAATTTCGC CAAGCAATTA GTAGAGGGAA CGGTATAATA GGTGATGATA TTACAGAAAA TGTTAAAAAA ATTAAATCAA TTCCTCTAAG ATTATTTAAA AAATACACAA TAGAAGTTAG AGGAGAAATT TTTATGCCCA TTAAAGAATT CGAAAAATAC AATAAAATTG CCGAAGAAGA AGGATTGCAA CCATTTGCCA ACCCAAGAAA TGCTGCTGCT GGAACTATTA GGCAACTGGA TTCCTCTATA GTTGCAAAAA GAAATCTAGA TTCATTTATA TATTACATAG TAAATCCAGA AAATTACAGT TTAAAAACAC AATGGGAGGC TCTGGATTTT TTAAAAAAAC TAGGATTTAA AGTCAATAGA CAATCAATAT TATGTAAAAA TGTTGAATGT ATTATAGACT TTTGGAAAAA AATGACTAAA GAGAGAAAAA ATCTTGATTA TTGGATTGAT GGACTTGTAA TCAAAGTAAA TAATTTTGAG TTTCAAAAAA TTTTAGGTGA AACATCAAAA TCACCAAGAT GGGCAATTGC ATTTAAATTT CCAGCAATAA AGAAAAAAAC TAAGATAATA GATGTAGAAC TTAACGTAGG AAGAAGTGGA ATAATAACCC CAGTTGCAAT TTTCGAACCC ATAGATCTTG ATGGAACAAT TGTAAAACGT GCATCTTTAC ATAATTTTGA ATATATCCAG GACAAAGATA TAAGAATAGG CGATTATGTT TATATAGAAA AAGCAGGTGG AATAATTCCA CAAGTTGTAA GTGTAGTAAA AGAAAAAAGA ACAGGTTTAG AAAAAGAAAT AAAAATTCCT AAAAGTTGTC CTGTATGTAA TGGACCAGTT GGCAAACTAA CTGAAGACGA AATCGCTATA AGATGTCTTA ACCCTCATTG TCCTCAGAAA CTAAAAAGAC ATTTAGAAAT ATTCGTCTCA AAATCTGCAT TCGACATTTC AGGAATAGGC GAAAAAATAA TAGATAAAAT AGTCGATGCA AAGTTGATAA AAGATATAGC GGACATTTTT TACCTAACAC CTTTTGATTT GGCTCAAATA AGTGGTTTGG GTCAGAAATC AATTGCAAAA ATTTTAGAAC AAATAGAAAA ATCGAAAAAA ACACCGCTAA ATAGGGTTAT AGTTGGACTA GGTATTCCGA TGGTTGGAGA AAAAACCTCA AAAATTCTTG CAGAAAAATT CAAAAATATT GAAAAATTGT CCTCTGCAAC GTATGATGAA TTAATAAAGA TTGAAAATAT CGGCCCTGAA ATTGCCAAAA GTATAGTAAC TTATTTCCAA AACGAAAAAA CAAAGGAAAT CATTAATAAA CTCAAAAAAG CTGGTGTAAA TCTTGAAGAA AAAGATGTAA AAAAGTCCGA CAAACTTAAA GGGTTAACAT TCGCAATTAC AGGAAAACTA AAATCATACA CAAGAGAAGA AATTAAAAAA ATAATAGAAG AAAATGGAGG AAAAGTTTCA AATTCAGTTA GTTCAAAAAC AAACTTTTTA ATTGCAGGAG AAGAGCCTGG TTCAAAACTT GAAAAAGCCA AAAGATTAAA TATAAAAATA ATCTCAGAAG AAGACTTTTT AAAACTCATC AGTGGCTAA
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Protein sequence | MKNIKEEIER LRKEIEYHNY RYYVLADPII SDEEYDRLLK KLIELEKKYP KFSSPNSPTQ KVGGGVISGF EKVEHTTPML SLDNTYNETE IKEFDNRIKR LLNRNSVEYV CELKIDGISV SIRYENGEFR QAISRGNGII GDDITENVKK IKSIPLRLFK KYTIEVRGEI FMPIKEFEKY NKIAEEEGLQ PFANPRNAAA GTIRQLDSSI VAKRNLDSFI YYIVNPENYS LKTQWEALDF LKKLGFKVNR QSILCKNVEC IIDFWKKMTK ERKNLDYWID GLVIKVNNFE FQKILGETSK SPRWAIAFKF PAIKKKTKII DVELNVGRSG IITPVAIFEP IDLDGTIVKR ASLHNFEYIQ DKDIRIGDYV YIEKAGGIIP QVVSVVKEKR TGLEKEIKIP KSCPVCNGPV GKLTEDEIAI RCLNPHCPQK LKRHLEIFVS KSAFDISGIG EKIIDKIVDA KLIKDIADIF YLTPFDLAQI SGLGQKSIAK ILEQIEKSKK TPLNRVIVGL GIPMVGEKTS KILAEKFKNI EKLSSATYDE LIKIENIGPE IAKSIVTYFQ NEKTKEIINK LKKAGVNLEE KDVKKSDKLK GLTFAITGKL KSYTREEIKK IIEENGGKVS NSVSSKTNFL IAGEEPGSKL EKAKRLNIKI ISEEDFLKLI SG
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