| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmel_1286 |
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| Symbol | |
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| ID | 5297780 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermosipho melanesiensis BI429 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009616 |
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| Strand | + |
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| Start bp | 1295324 |
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| End bp | 1297108 |
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| Gene Length | 1785 bp |
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| Protein Length | 594 aa |
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| Translation table | 11 |
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| GC content | 29% |
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| IMG OID | 640769560 |
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| Product | polysaccharide biosynthesis protein CapD |
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| Protein accession | YP_001306520 |
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| Protein GI | 150021166 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.190847 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAACAGGA AATTTTTATT GTTCTTAGTA GATATATTTT CTACGTTTTT AGCGGGAATA
TTATCTCTAT TTGTTAGGTT TGGTTTTAAT TTTAGAGAAA TGAGTAAATA TGATGAATCT
ATATATATAT ACATTCTCAT TTCCTCAATC GTATATATCT TTAATGGGAA TTATAAGATA
GTTTGGAGAT ATGCTAATCA AAAAGATTTT TTAAAGCTTT TCAGGTCGTC AATAATTTCT
TACTTTTTAG TTCTTACATT TTTCCATTTT GCAAACAATA TTGTTTTACC TAGATCCGTT
GGATTTGTAA TGTTTTTATC TTCTTTTACT ATTTTAGTTG GGGTGAGGTT ATTTTACCAA
TTTATTTTGG AAAATAGAAG AAATTCGGAA AGAAGGTATT TGATAATTGG AAGTGGTGAT
GTTGCAGTTT CAATTGCTGA AGAAATAATT AAATCTGGTT TAGGTGATGT TGTAGGTTTT
ATAGGTGATG ATGCGAGTAA AATAGGGCGT ACAATCTTTG GAAAAAAGGT TTTAGGCCCA
TTGATAAAAT TAGAGGATTA TTTAAAATTG TTTGATTATG ATGAAGTTAT TATTGCGCAG
CCAAATTTAA ATAGTAAGCA AATAAATGAT ATTATTGAGA AAGTAAATTT GAAGAGAACA
AAGGTTAAAG TAATTCCATC ATTTGAAGAA TTATTTAAGG AGAAAATTGG TATAGAAGAT
ATAAGGGAAA TTTCATTGGA GGATATTATA GGAAGAGAAC CTGTAAAAGT AAGTTTAAAT
GATATAAAAG AATGTATTAA GGACAGAGTT GTCTTAGTTA CGGGAGCAGG TGGAAGTATT
GGCTCTGAAA TATGTAGACA GATTGCTTTT CAAAAACCAA AAGAGTTATT ATTACTTGGC
AGGGGAGAAA ATAGTATTTA CGAAATTAAT GAAGAATTAA ATGAAAAATT TCCTGACTTA
AAAGTTTCAA GAATCATTGC CGATGTGGAA AATTATAAGT GGATGGAAGA AATTTTTAAG
AGATATAAGC CAGAAATTGT TTTTCATACA GCTGCTCATA AACATGTTCC ACTTATGGAA
GAAAATCCCT ATGAGGCTAT AAGAGTTAAT GTTTTTGGTA CTATTAATTT GGTTAAACTT
TCATGTGTTT TTAATGTTGA AAAATTTGTT TTCATATCAA CAGATAAAGC GGTGAATCCC
ACGTCTTTTA TGGGGTTAAG TAAAAGAATT TCCGAACTGT ATGTACTATC AAAAAAGTGT
AGTACAAGGT TTTCTATCGT AAGATTTGGA AATGTTATTG GAAGTAGAGG CAGCGTGCTA
TGGAAATTTA AAAAACAAAT TGAGAATGGG AAACCTGTTA CAATTACTCA TCCCGAGATG
AAAAGGTATT TTATGAGTAT TCCAGAAGCA GTTTCTTTGG TTTTGCAATC TATAGTACTA
AATGGTAATT TATTTGTTTT GGATATGGGG AAACAAATTA GTGTTGAACA GATTGCAGGA
AAACTGGCAA AACTTCTTGG TAAGGAAGAT ATCGATGTGG TGTATACAGG AATTAGAGGA
GGTGAAAAAC TGTATGAAGA ATTGTTTTAT CCTTATGAAA TACCTAAAAA TACGGAACAT
CCAAAGATTT ATTCTGTGGA TTTTAGGCCA AATATTAGTG AAAACGAAAT TGAATATATT
TCTAAAGAAA TACTGGAAAG TTTAATGCAT TTTAATATAG AAAAAGCTGA AATGCTGGCG
AAAAAAATAG TACCAGAATT TAAATTTAGA GGAGGAGTAA AATGA
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| Protein sequence | MNRKFLLFLV DIFSTFLAGI LSLFVRFGFN FREMSKYDES IYIYILISSI VYIFNGNYKI
VWRYANQKDF LKLFRSSIIS YFLVLTFFHF ANNIVLPRSV GFVMFLSSFT ILVGVRLFYQ
FILENRRNSE RRYLIIGSGD VAVSIAEEII KSGLGDVVGF IGDDASKIGR TIFGKKVLGP
LIKLEDYLKL FDYDEVIIAQ PNLNSKQIND IIEKVNLKRT KVKVIPSFEE LFKEKIGIED
IREISLEDII GREPVKVSLN DIKECIKDRV VLVTGAGGSI GSEICRQIAF QKPKELLLLG
RGENSIYEIN EELNEKFPDL KVSRIIADVE NYKWMEEIFK RYKPEIVFHT AAHKHVPLME
ENPYEAIRVN VFGTINLVKL SCVFNVEKFV FISTDKAVNP TSFMGLSKRI SELYVLSKKC
STRFSIVRFG NVIGSRGSVL WKFKKQIENG KPVTITHPEM KRYFMSIPEA VSLVLQSIVL
NGNLFVLDMG KQISVEQIAG KLAKLLGKED IDVVYTGIRG GEKLYEELFY PYEIPKNTEH
PKIYSVDFRP NISENEIEYI SKEILESLMH FNIEKAEMLA KKIVPEFKFR GGVK
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