| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmel_1276 |
|---|
| Symbol | |
|---|
| ID | 5296594 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermosipho melanesiensis BI429 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009616 |
|---|
| Strand | + |
|---|
| Start bp | 1284313 |
|---|
| End bp | 1286004 |
|---|
| Gene Length | 1692 bp |
|---|
| Protein Length | 563 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 640769550 |
|---|
| Product | type II secretion system protein E |
|---|
| Protein accession | YP_001306510 |
|---|
| Protein GI | 150021156 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
|---|
| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTTGAAA AGAGATATAA AAGATTGGGA GATATTTTAA TTGAAAAAGG AATAATTTCA
AATGATGATC TTGAATATGC ATTGCAGATT CAAAAAAAGA CGAGAAAACC TATAGGAGAA
GTTTTGGTGG AACTTGGTTT TTGTACTTGG AGTCAAATAA TTAAAGCTTT AGCTGAACAA
TATGAAGTGC CATTTTTTGA AGAAAAGCCA AGGGTAGATC CTACGTTAAA TTTAAATATG
AAAAGGGAAC TTATGGAAGA ACTTAGAGCA ATCCCAATAA GAATGGAAAA TGACAAGATA
GTGGTTATTA CAGATAATGT ATACAATGTT TCATTGATAA AGAGAAGATT AAAATTTTTA
TTTGGGAAAG ATATAGAGAT TTACCTTGTT GCTCCTGATA TATTTGAAGA AGTTATGATG
GATGTTTCTT CTGAAAGAAC AGTAGAGTTT GAGGTTTCAG ATGTTCTAGT AGAAGAACAG
GAAGAGCCCC AAGAAAACTT AGAGGAAATT GAGAATGAAG ATACGCCAAT TGTAAGATTG
GTAAATAACT TGCTTACACA TGCTATAGAA CTTGATGCAA GTGATATACA CATTGAACCC
AGGGAAAGAA AGAATGTTGT TGTAAGATAT AGAATTGATG GAGTTTTGAG AAAAATTACT
GAATATCCGA AAAATAGTCA TAATTCAGTG GTTGCAAGAA TAAAGATATT ATCAAAATTG
GATATTACGG AAAGAAGAAT ACCACAGGAC GGAAAGTTTT TTATGAATGT TAGAGGAGAG
CAATATGATT TTAGGGTTTC TACTATGCCA TCTGTTAATG GGGAGAAAGT AGTAATGAGG
ATTTTAAAAG TGTCACAATC CAATAAAAAA TTGGAGGAAT TGGGATATAG TAGTTATAAC
TTTGAAAGAA TAAAAAGGTT AATTAGTCAT CCGTATGGAA TTATCTTGGT TACAGGACCT
ACTGGTAGTG GAAAAAGTAC TACTTTAGTT GGGATAATTA ACTCTTTGAA TAATGAATCG
GTAAATATTG TAACAGCGGA AGATCCAGTG GAATATACAA TAGAAGGCGT TACGCAATGT
CAGGTAAATC CAGAGATTGG TTTAACTTTT GCAAAATATT TAAGGGCTTT TTTAAGGCAA
GATCCTGATA TTATAATGGT TGGAGAAATT AGAGATAGAG AAACCGCTAA TTTGGCAGTT
GAAGCATCTT TAACGGGGCA TTTGGTGTTA TCAACTCTTC ACACAAACAC AGCTGCGGGA
GCAGTTGACA GATTGCTCAA TATGGGAGTT GATCCTAGTC TCATTAGTTC CTCATTAATT
GGAGTTATAG GGCAGCGACT TGTAAGAAAA GTATGTAATA ATTGTGCAAA AGAGGTTGCG
CTTGATCCAG AGTATGGAGC TTTTGCACAA AAAGTTTTTC CTGATATGCA ATTAAATCAA
AAGATAGCAG TTGGTTGTGA TGCATGTAAT AATACGGGAT ATAAAGGAAG AACTGCTATA
AATGAAGTGT TAATTGTCGA TGATGAATTA AGAACTTTAA TAAATAAAAG AGCATCACTT
TCTGAAATAA CAAATGCTGC AAAAAAGGGT GGAATGAGAA CTTTGTTTGA AGATGGCCTT
TACAAAGTTT TAAGTGGTGA AACTACCCTT GAGGAAGTAA TCAGAGTTAC AGGTGGGATG
TATGAAGAAT AA
|
|---|
| Protein sequence | MLEKRYKRLG DILIEKGIIS NDDLEYALQI QKKTRKPIGE VLVELGFCTW SQIIKALAEQ
YEVPFFEEKP RVDPTLNLNM KRELMEELRA IPIRMENDKI VVITDNVYNV SLIKRRLKFL
FGKDIEIYLV APDIFEEVMM DVSSERTVEF EVSDVLVEEQ EEPQENLEEI ENEDTPIVRL
VNNLLTHAIE LDASDIHIEP RERKNVVVRY RIDGVLRKIT EYPKNSHNSV VARIKILSKL
DITERRIPQD GKFFMNVRGE QYDFRVSTMP SVNGEKVVMR ILKVSQSNKK LEELGYSSYN
FERIKRLISH PYGIILVTGP TGSGKSTTLV GIINSLNNES VNIVTAEDPV EYTIEGVTQC
QVNPEIGLTF AKYLRAFLRQ DPDIIMVGEI RDRETANLAV EASLTGHLVL STLHTNTAAG
AVDRLLNMGV DPSLISSSLI GVIGQRLVRK VCNNCAKEVA LDPEYGAFAQ KVFPDMQLNQ
KIAVGCDACN NTGYKGRTAI NEVLIVDDEL RTLINKRASL SEITNAAKKG GMRTLFEDGL
YKVLSGETTL EEVIRVTGGM YEE
|
|---|
| |