Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tmel_1187 |
Symbol | |
ID | 5296561 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thermosipho melanesiensis BI429 |
Kingdom | Bacteria |
Replicon accession | NC_009616 |
Strand | - |
Start bp | 1205352 |
End bp | 1207256 |
Gene Length | 1905 bp |
Protein Length | 634 aa |
Translation table | 11 |
GC content | 32% |
IMG OID | 640769464 |
Product | methionyl-tRNA synthetase |
Protein accession | YP_001306426 |
Protein GI | 150021072 |
COG category | [J] Translation, ribosomal structure and biogenesis [R] General function prediction only |
COG ID | [COG0073] EMAP domain [COG0143] Methionyl-tRNA synthetase |
TIGRFAM ID | [TIGR00398] methionyl-tRNA synthetase [TIGR00399] methionyl-tRNA synthetase C-terminal region/beta chain |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.00127744 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | GTGAAAAAAT TTTATTTGAC AACCCCTATA TACTATGTTA ATTCGGAACC TCACATTGGA AGCGCATACA CAACTATTAT TGGGGATATA ATAGCAAGAT ACAAAAGGCT CATAGGATAT GACGTCTTTT ATTTAACAGG TACTGATGAA CATGGTCAAA AAATAATGCA AGCTGCCAAA AAAAGGGAAA TTGAGCCAAA ACAGCTCTGT GATGAACTTT CAGAAAAATT CTCACAACTT TGGAAGGATC TCAAAATAAC AAACGATTAT TTTATAAGAA CAACAGATCC TAAGCATATG AAAACCGTTC AACTTTTTGT CTCAAAGATG CTTGAAAACG GAGATATTTA CAAAGGAATA TACAAAGGAT GGTATTGTAT TCCTTGTGAA ACATATTGGA ATGAAGATGA AACAGAACAA ATAGAAGGAA AACATATCTG TCCCACTTGT GGAAGGGAAC TAAATTTTGT TGAAGAGGAA AATTATTTTT TTAGACTTTC AAAATACACA GAACCATTAT TAAAACATTT TAAAGAAAAT CCCGATTTTG TGGAACCAGA TTTTAGAAGA AATGAAATGT TGAAAATACT CGAAAGTGGT TTAAAAGATC TTTCAATCAC CAGAACAACA TTTGACTGGG GAATTCCAAT GCCAAACGAT CCCAATCACG TCATATATGT ATGGGTTGAT GCATTAATAA ACTACATATC GGCGATTGGT TATGGCTCTG ACCAAGAAAA ATTCGAAAAG TGGTGGCCTG CTGATTTACA TTTAATTGGA AAAGAAATAA ATAGATTTCA CAGTCTTATC TGGCCTGCTA TGTTAATGTC CGTGGGGTTA CCTTTACCTA AAAAAATATT TGCTCATGGA TGGCTTACCG TCAATGGACA AAAGATAAGT AAATCCTTAG GTAACGCCAT TGATCCTAGA GAATTTGTTA AAAAGTATGG CAATGATGTA GTAAGATATT ATCTTGCAAG AGACATAGTT TTTGGAAAAG ATGGAGATTT CTCCGAAGAA AACCTAGTCC ATAGGTTAAA TTCGGATCTT GCAAACGATT ATGGTAATTT ACTACATAGA ACCATAGCTA TGGTTGTAAA AAACTTTGAT TCGATAATTC CAGAACCAAA TAACATTCAG GAAATTGACG AAAAGTTAAT CAAAGAGTAT TTTGAAGTAA AAGAAAAATA CCTAGAATAC ATGGAAAGTT ATAAACTAAC AAATGCACTC GAAACCATTT GGGAATATAT AAGGTATATT AACAAGTACT TTGATGAAAA CAAACCATGG GTATTAGCAA AAGAAGGTAA CAAAGGAAGA CTATCAACAG TTTTATACAA TACCCTTGAA GCTTTCTTAA AGGTTGCAAC TTTATTAATA CCATTTATGC CGTACTCTTC TGAAGAGGTA TTCAACAGAC TTGGTCAAGA AAGAAATTTC CAAAAAATAC TAAACGAATG GAATACAATA AAACCAACTA CTAAAGCTGT TCACGGAAAA CCTTTGTTTA ACAAAATAGA TTTAAAAAAG TTTGAAAAGA TAGCTGTAAA AAAGGAAGAA AAAAAAGAAG AACATGGTGT ACTTATTTCA ATAGACGACT TTAAAAAACT TGACCTTAGA ACAGCTAAAA TAATAGAAGC ACAAAAAATT GAAAAATCTG AAAAACTTTT GAAATTAATA GTCGATTTAG GCAAACTTGG CAAACGCCAA ATAGTTGCTG GAATTGCAAA ATTTTATTCA CCAGAAGAAC TCATAGGCAA AAAAATTGTA GTTGTATACA ATCTAAAACC CGCAAAATTA ATGGGAATAG AATCGCAAGG AATGTTACTT GCCGCGAAAA TTAACGACAA ACTTTCGATA TTAACAGTAG ATAAAGATAT AGAACCAGGC GCTAAAATTT CATAA
|
Protein sequence | MKKFYLTTPI YYVNSEPHIG SAYTTIIGDI IARYKRLIGY DVFYLTGTDE HGQKIMQAAK KREIEPKQLC DELSEKFSQL WKDLKITNDY FIRTTDPKHM KTVQLFVSKM LENGDIYKGI YKGWYCIPCE TYWNEDETEQ IEGKHICPTC GRELNFVEEE NYFFRLSKYT EPLLKHFKEN PDFVEPDFRR NEMLKILESG LKDLSITRTT FDWGIPMPND PNHVIYVWVD ALINYISAIG YGSDQEKFEK WWPADLHLIG KEINRFHSLI WPAMLMSVGL PLPKKIFAHG WLTVNGQKIS KSLGNAIDPR EFVKKYGNDV VRYYLARDIV FGKDGDFSEE NLVHRLNSDL ANDYGNLLHR TIAMVVKNFD SIIPEPNNIQ EIDEKLIKEY FEVKEKYLEY MESYKLTNAL ETIWEYIRYI NKYFDENKPW VLAKEGNKGR LSTVLYNTLE AFLKVATLLI PFMPYSSEEV FNRLGQERNF QKILNEWNTI KPTTKAVHGK PLFNKIDLKK FEKIAVKKEE KKEEHGVLIS IDDFKKLDLR TAKIIEAQKI EKSEKLLKLI VDLGKLGKRQ IVAGIAKFYS PEELIGKKIV VVYNLKPAKL MGIESQGMLL AAKINDKLSI LTVDKDIEPG AKIS
|
| |