| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmel_1087 |
|---|
| Symbol | |
|---|
| ID | 5296971 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermosipho melanesiensis BI429 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009616 |
|---|
| Strand | + |
|---|
| Start bp | 1110306 |
|---|
| End bp | 1112156 |
|---|
| Gene Length | 1851 bp |
|---|
| Protein Length | 616 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 29% |
|---|
| IMG OID | 640769370 |
|---|
| Product | ATP-dependent OLD family endonuclease |
|---|
| Protein accession | YP_001306332 |
|---|
| Protein GI | 150020978 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3593] Predicted ATP-dependent endonuclease of the OLD family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.14427 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATAG CTAAAGTGAT TTTAGAGAAT TTTAGAGCAT TTTATGGACG TAATGAAATA
CCTATTGAAG ATTTTACAGT TTTTATTGGA CGTAATGATC AGGGAAAGTC TACGATTTTA
GAAGCTATTG ACATTTTTAT AAACGATGGG AAAGGGGTAA CAAAAATAGA GGAAAATGAT
TTAAACATTA AAGCAAAAAA TGAAGGAAAT GAAATTTTTA AAATAGGTGT TTGTTTTAAA
GATTTACCTG AAAATATTGT TATCGATGCT ACAAATACTA CAACTCTTCA AAATGAGTAT
TTACTAAGCA AAGAAGGTTT TCTTGAAATT TATAAAGTCT TTAAAAATGG GAAATTACAA
AATAAGGAGA CATATATAAG ATGTATGCAT CCGGCAAATG ATAGTTTTTT AGAAGGCCTT
TTAAAGAAAA AGATTACTGA ATTGCAAAAT TTTGTAAGAG AGAAAGGGCC AGATTGTTTG
GATCTTAGAA AAAGTGCTGA ACTGCGAAAA TGTATAAGAG ATTATTATAA AAGTAAGGAT
GGCGATCTAG TGTTAAAAGA AATTGATTTA AAAATAAACG AAGAAGGAAT GAAGGATATA
TGGCTGCAGT TAGAAAAGTG TTTGCCTATT TTTTCTTTAT TTCACTCTGA TAGGCCAAAT
ACTGAACAAG ATAGTGAAAT ACAAGATCCG TTAAAAACTA AGGTAGATGA GATATTTAAA
AGAGAGGATA TTCAAAATAA ATTGGAAGAA ATTGCTAAAG AAATTGATGA AGAATTAAAA
AAGATTGCTA ATGCTACTGT GGAAAAATTC AGAGAATTAA GCCAACAGGA TACAGAAATA
AAACCCAATA TACCAGAGGT TGGGAAGTTA AGATGGAAAG ATGTTTACAA AGGAATAGGT
TACAATACTG ATAACGATAT ACCACTTAAT AAGCGAGGAA GTGGATTAAG GCGTTTAGTG
CTTGTTAGTT CCTTTTTGGC CGAAATTAAA GCTCAAAATG AATCAGAAGA TAATTTAAAT
GTAATTTATG CGATTGAAGA ACCTGAAACT GGTTTGCATC CAGAAATGCA GAAAACATTG
ATTAATAATC TAATTAAGCT TTCTAAAAAT GGCAAACATC AGATATTAAT TACAACACAT
AGTCCTGCTT TAATAAGATT TTTTGAAACA GATAGTGTGA GATATGTTGA GCAAGAAAAT
GGCAAAGCAA AAGTTTATCT TTTCGATGAA AATATAGGAG GCAAAATAGT TAAAGAACTT
GGATTATTGC CTAACATTGG AAAAGTTGTA ATATGTGTTG AAGGTACAAA TGATAAGAAT
TTTTTAATGA ACATAAACCA AAATATACCT GAACTAATGG AAATTATAGA TTTGAAAGAG
AAAATTGAAA GTGGATTAAT TTCAATAATT CCAATGCAGG GAAGCAATTT AAATGAATGG
ATAGATTGTT ATGCTTTAAA AAACACAAAT GTTGTAGAAT TTCATTTGTA TGATCGCGAT
TGTGATGAGA AATATAAAAA AGCTGTTGAA GAAGTGAATC AACGTAAAGA CGGTTCTTAT
GGAGTATTAA CCACAAAAAG AGAGATTGAA AACTATATTC CAAGAAGACT TATTGAAGGA
AGTTTAAATA TAAAAATAGA ATTGGACGAC TGGGACAATA TAGATATTCC AAAAAAAGTT
AAAGAAAAAG TGACCAGATT TAGTGATGAA AAAGATGTAA AGAATTATTT GTGTGGCTCA
TTGTCTAAAA AAATTACAAA AAAAGATTTG GAAGATTTGA ATGCTTGGGA TGAAGTAAAA
AGCTGGTTTG AAAAGATAAA AGAGCTTTGT TCAAAAAGTT TTGACCATTA A
|
|---|
| Protein sequence | MKIAKVILEN FRAFYGRNEI PIEDFTVFIG RNDQGKSTIL EAIDIFINDG KGVTKIEEND
LNIKAKNEGN EIFKIGVCFK DLPENIVIDA TNTTTLQNEY LLSKEGFLEI YKVFKNGKLQ
NKETYIRCMH PANDSFLEGL LKKKITELQN FVREKGPDCL DLRKSAELRK CIRDYYKSKD
GDLVLKEIDL KINEEGMKDI WLQLEKCLPI FSLFHSDRPN TEQDSEIQDP LKTKVDEIFK
REDIQNKLEE IAKEIDEELK KIANATVEKF RELSQQDTEI KPNIPEVGKL RWKDVYKGIG
YNTDNDIPLN KRGSGLRRLV LVSSFLAEIK AQNESEDNLN VIYAIEEPET GLHPEMQKTL
INNLIKLSKN GKHQILITTH SPALIRFFET DSVRYVEQEN GKAKVYLFDE NIGGKIVKEL
GLLPNIGKVV ICVEGTNDKN FLMNINQNIP ELMEIIDLKE KIESGLISII PMQGSNLNEW
IDCYALKNTN VVEFHLYDRD CDEKYKKAVE EVNQRKDGSY GVLTTKREIE NYIPRRLIEG
SLNIKIELDD WDNIDIPKKV KEKVTRFSDE KDVKNYLCGS LSKKITKKDL EDLNAWDEVK
SWFEKIKELC SKSFDH
|
|---|
| |