| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmel_0729 |
|---|
| Symbol | |
|---|
| ID | 5296494 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermosipho melanesiensis BI429 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009616 |
|---|
| Strand | - |
|---|
| Start bp | 766813 |
|---|
| End bp | 769158 |
|---|
| Gene Length | 2346 bp |
|---|
| Protein Length | 781 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 640769009 |
|---|
| Product | homocysteine S-methyltransferase |
|---|
| Protein accession | YP_001305978 |
|---|
| Protein GI | 150020624 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0646] Methionine synthase I (cobalamin-dependent), methyltransferase domain
[COG1410] Methionine synthase I, cobalamin-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTATGGTA GGATGGTGGT AATTTTGGAA AGAAAAGAAT TTTTAGAACT GTTAAATGAA
AGAATATATT TTTTGGATGG AGCATATGGT ACGGAATTTT TTAAATTGGG TTTTAAGGAA
GTAATTGAAA CTTTAAATGT TACAAATAGT GAAATGGTTT ATGCCCTTCA AAAGGCTTAT
GTTGATGCAG GGGTAGATTT TCTTTTAACA AACACTTTTA GTGCAAACAG GTTGAAACTA
AGTTCATTAA AGGTGAAATA TAATTTAAAG GATATTAATT ACAATGCGGT AAAGATAGCG
AAGAAGGCCA GAAAGGATAA AAAAGTTTAT ATACTTGGTG ATATATCGTC AACGGGATAC
CTTATTTCAC CACTTGGAGA ATTAACTTTT GATGAAGCAT ACGAGGTGTT TAAAGAGCAA
GGGGAGATAC TTTTAAATTC TGGGATTGAT GGGTTTATTT TGGAAACTAT GTCTGATTTA
AAAGAGTTAA AAGCGGCTAT TTTGGCCTTG AGAGATTTGT CAAAGGATGT ACCAATAATT
GTTCAAATGA CGTTTGATGA AGATGGAGTA GCTGTTACGG GGACAAGTGT GGAAATTTTT
TCTACATTGA TGAATGATTT AGATGTGGAT GTTGTAGGAA TAAATTGTAC ACTTGAGCCG
GAAAAATTAT TACCCGTTTT TAAGCAACTC TCAAATTATT CAAGAAAGCC TATAAGTGTA
GAGCCAAATG CGGGAAAACC AAAGCTATTG AGAGATGGTA GCATAGTATA TAACACATCT
CCTGAAAAAT TTGCATTGTA TATGGAAGAC TTTGTTGAAT TTGGTGCAAA TATAGTAGGA
GGATGTTGTG GGACATCACC TGAGCATATA AGGTTGATGG TTGAATTTTT GAAAGAAAAA
AAGCCTAAGA AAAGAGAGAT AGTAAAAGAG GAATTTGTTT CAAGTAGAAC CAAGTTAAAA
AAAATGAAGC CATTCCTTAT AATCGGCGAA AGAATTAATG CTGCAGGAAA GAAAAAGTTT
CAACAAAAAA TAAGAGAAAG AAATTACAAC AAGATAGTAG AACTTGCAAT TTTACAAGAA
AAAGAAGGTG CCCATGTATT GGATCTAAAC CTTGGAATAG AAAAATTACT TGATAAAACA
CATTTTAGTC AAGTTGTTAA TACATTAGAT AAGATAAGTT CTTTACCTCT TTCGTTGGAT
ATACAAGAAT TTGAGTTTAT GGAAATGGCA TTGAAAGAAT ATGTAGGAAG ACCTATAATA
AACTCTTCAA CTGCAAAAAG GGAAAATTTA GATAAAGCAA TTTATCTTTT AAAAAGATAC
GGTGGAATTT TGATTCTCTT AACCATGAAG GATAAGATAC CTGAAAGTGC AAAGGAGCGA
TTTGATATAG CACTTGAAGC TATAAGGTAT CTAGAAAAAC ATGATATAGA AAAAGAGCGT
GTAATTGTTG ATCCGTTGGT TTTGCCATTG GGGGCCAAGA AAGATCCAGC TGTTACAATA
AAAACAATCG AACTTCTTTC AAAAGAGGGT ATAAATACAA GTATAGGACT TTCTAATTTA
AGTTTTGGTA TGCCAAATAG AGAAGCTCTT AATAGTTCAT TTTTGGCTCT TTGTATTGAT
AAGGGATTAA CTGCGGCTAT TTTGAATACA TCTGAAAAGT GTACCATGAA TGCTGTATTT
GGTAGCCTTA CTTTAAAAGG AGTGGATTTT GAAAAAAAAG AGATAATACG TAACGAGCCC
ATGATTGAAA TGATACTAAA CAAAAAAGAA GATGAATTAA AAAGAGAGAT AGAGAAATTA
CTTGAAGAAT ATACTCCTCT TCAAATAAGT CAGGATATTC TTTCGAAGAA GATGGAGTAC
ATTGGAGAAC TGTATTCAAA AGGGGAAATA TATCTCCCAC AACTTATTCT CGCCGCAGAA
ACAGTAACTC CTATATTTGA ATACCTAAAT TCATTAATTG AAAGTAACGC TAGGGAAAAG
TTGGGAACAG TTGTACTTGC AACGGTAGAG GGGGATGTGC ATGATATAGG TAAAAGGATA
GTTGGAACGG TTTTAAAAAG TTCTGGTATA AACGTTATAG ATCTTGGAAA GGACGTTCCT
GCAAAAGAAA TTTTAAAGGC GGTTAAGGAA TATAAACCTG ATATAGTCGG TTTATCTGCC
ATGATGACAA CAACTATTGG AAGAATAAAA GAGGTAAAGG ATTTATTTGT CGATAATAAT
GTAGATATTC CTATAATTTC TGGAGGAGCA TCTATGAACA AAGAAATTGC GGATAATTTT
GGTGTATATT ATGCCAAAAA CGCATCACAA GCACTAAAGT TGGTAAAAAA AATACTTAAG
AGGTGA
|
|---|
| Protein sequence | MYGRMVVILE RKEFLELLNE RIYFLDGAYG TEFFKLGFKE VIETLNVTNS EMVYALQKAY
VDAGVDFLLT NTFSANRLKL SSLKVKYNLK DINYNAVKIA KKARKDKKVY ILGDISSTGY
LISPLGELTF DEAYEVFKEQ GEILLNSGID GFILETMSDL KELKAAILAL RDLSKDVPII
VQMTFDEDGV AVTGTSVEIF STLMNDLDVD VVGINCTLEP EKLLPVFKQL SNYSRKPISV
EPNAGKPKLL RDGSIVYNTS PEKFALYMED FVEFGANIVG GCCGTSPEHI RLMVEFLKEK
KPKKREIVKE EFVSSRTKLK KMKPFLIIGE RINAAGKKKF QQKIRERNYN KIVELAILQE
KEGAHVLDLN LGIEKLLDKT HFSQVVNTLD KISSLPLSLD IQEFEFMEMA LKEYVGRPII
NSSTAKRENL DKAIYLLKRY GGILILLTMK DKIPESAKER FDIALEAIRY LEKHDIEKER
VIVDPLVLPL GAKKDPAVTI KTIELLSKEG INTSIGLSNL SFGMPNREAL NSSFLALCID
KGLTAAILNT SEKCTMNAVF GSLTLKGVDF EKKEIIRNEP MIEMILNKKE DELKREIEKL
LEEYTPLQIS QDILSKKMEY IGELYSKGEI YLPQLILAAE TVTPIFEYLN SLIESNAREK
LGTVVLATVE GDVHDIGKRI VGTVLKSSGI NVIDLGKDVP AKEILKAVKE YKPDIVGLSA
MMTTTIGRIK EVKDLFVDNN VDIPIISGGA SMNKEIADNF GVYYAKNASQ ALKLVKKILK
R
|
|---|
| |