| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmel_0725 |
|---|
| Symbol | |
|---|
| ID | 5297807 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermosipho melanesiensis BI429 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009616 |
|---|
| Strand | - |
|---|
| Start bp | 762071 |
|---|
| End bp | 763327 |
|---|
| Gene Length | 1257 bp |
|---|
| Protein Length | 418 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 640769005 |
|---|
| Product | tryptophan synthase subunit beta |
|---|
| Protein accession | YP_001305974 |
|---|
| Protein GI | 150020620 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1350] Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) |
|---|
| TIGRFAM ID | [TIGR01415] pyridoxal-phosphate dependent TrpB-like enzyme |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.000155508 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGGGTTA TTTATCTAAG CACTGAGGAG ATGCCAAGGC ATTGGTATAA CGTTCTTTCA
GATTTGCCTT TTGAATTAGA TCCACCACTT GATCCTGAGA CGACAAATCC CATTTCTCCG
GAAAAGCTTT TAAAGATTTT TCCAGAGCCT TTGCTTGAAC AGGAGATGAC TAAAAAAAGA
TTTATAGAAA TTCCAGATGA AGTACTAAAG GAGTATTTAA GATTTAGACC AACTCCACTA
ATTAGGGCAA AATTTTTGGA AGAGTATCTA GATACTCCTG CAAAGATTTT TTACAAATAC
GAAGGTGTAA GTCCAACAGG GAGTCATAAA ACAAATACGG CAATAGCGCA GGTGTATTAC
AATAGGATTT CTGGAACAAA GGTGTTGTAC ACTGAAACAG GTGCGGGACA ATGGGGAAGT
GCTTTATCTT ACGCAGGGTT AAAATTCAAT ATTCCTGTAA AAGTGTTTAT GGTAAGAGTA
AGCTTTGAGC AAAAACCAAT GAGAAAACAA CTTATGAATC TTTTTGGTGG AGATGTGGTA
CCATCGCCTA GTAAATTTAC AGAGTTTGGT AAGAGTTTTG ATGAAAATCA TCCGGGAAGT
TTGGGTATAG CCATTAGTGA GGCTATGGAA AAAGTGTTAA ACGAGGAAGG TGCAAAATAT
TCTTTGGGAA GTGTTTTAAA TCATGTGTTG TTGCATCAAA CGGTAATAGG GCTTGAAATA
AAAAAACAAC TTGAAAAAGT TAATTTAGAA CCTGATGTAA TAATAGCGTG TCATGGTGGA
GGTTCAAATT TTGGCGGAAC AGTTTTTCCT TTTGTTCCAG ATAAACTTTC TGGAAAAAAT
GTGGATTTTG TTGCATGTGA GCCGGAAAGT TGTCCTACTT TGACAAAAGG AGTATATAGA
TATGATTTTG GTGATAGTTC TGGTTTAACT CCTTTGTTGA AGATGTATAC CTTGGGAAAA
GATTTTATTC CACCAAAGAT TCATGCAGGT GGCTTAAGAT ATCATGGTGC TTCACCAATA
ATTTCGCGTC TTGTAAAAGA AGAAATAATT CGTGCAGAAA GTTTTTCGCA AGATGAAACA
TTTAATGCAG CAAGGATATT TGCAAAGGTT GAAGGAATTG TTCCAGCTCC TGAATCGGCT
CATGCTATAG CAGGCGCAAT AAGGGAAGCA AAAAGGGCAA AGGAGGAAAA AAGAGAAAAG
GTTATTGTTT TTACACTATC AGGGCATGGA TTATTTGATT TAAGTGCATA TAGTTAA
|
|---|
| Protein sequence | MRVIYLSTEE MPRHWYNVLS DLPFELDPPL DPETTNPISP EKLLKIFPEP LLEQEMTKKR
FIEIPDEVLK EYLRFRPTPL IRAKFLEEYL DTPAKIFYKY EGVSPTGSHK TNTAIAQVYY
NRISGTKVLY TETGAGQWGS ALSYAGLKFN IPVKVFMVRV SFEQKPMRKQ LMNLFGGDVV
PSPSKFTEFG KSFDENHPGS LGIAISEAME KVLNEEGAKY SLGSVLNHVL LHQTVIGLEI
KKQLEKVNLE PDVIIACHGG GSNFGGTVFP FVPDKLSGKN VDFVACEPES CPTLTKGVYR
YDFGDSSGLT PLLKMYTLGK DFIPPKIHAG GLRYHGASPI ISRLVKEEII RAESFSQDET
FNAARIFAKV EGIVPAPESA HAIAGAIREA KRAKEEKREK VIVFTLSGHG LFDLSAYS
|
|---|
| |