| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmel_0649 |
|---|
| Symbol | |
|---|
| ID | 5297953 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermosipho melanesiensis BI429 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009616 |
|---|
| Strand | - |
|---|
| Start bp | 686428 |
|---|
| End bp | 687018 |
|---|
| Gene Length | 591 bp |
|---|
| Protein Length | 196 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 32% |
|---|
| IMG OID | 640768929 |
|---|
| Product | RnfA-Nqr electron transport subunit |
|---|
| Protein accession | YP_001305898 |
|---|
| Protein GI | 150020544 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2209] Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrE |
|---|
| TIGRFAM ID | [TIGR01940] NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit
[TIGR01943] electron transport complex, RnfABCDGE type, A subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.131212 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCTAATA TAAATCCTTT TGTCTTATTT TTTGCTTCCA TTTTTACAAG TAATATACTT
CTTTCCAATT TCCTTGGTAT GTGTTCGTTT ATTTCTATTT CAAAGTCGTT AAAATCTTCC
AATGGTCTTG GGATGGCTGT GACAATGGTA ATGACAATAG CTACAGTTCT AAACTGGATT
GTTGAAAAGT ATATAATTGT TTCTTTTAAT ATAGAATATT TGCGTTACAT TGTTTACATT
GTGGTTATAG CCTCGGTGGT CCAAATTCTT GAAATGGTTA TAGACAGAGT CTCACCAAAT
TTGTATATAA GTCTTGGTAT ATTTTTACCA CTTATTACTG TTAACTGTGC AATTTTGGGT
GTTGTTCTCT TTATGCAACT TAGAAATTAT TCTTTAATTC AATCTGTATT TTTTGGTTTA
GGTTCAGGGA TTGGTTGGTG GCTTGCAATA GTTTTACTTG CTGCAATAAG AATAAAAGTT
GATAAAGCAC CCGTTCCTGC TCCTTTAAAA GGTGTTGGTA TTACGTTGAT AACAATAGGT
ATTATGGCTA TGGCTTTTAT AGGTTTTGCT GGTATGATTA ATGTGCAATG A
|
|---|
| Protein sequence | MPNINPFVLF FASIFTSNIL LSNFLGMCSF ISISKSLKSS NGLGMAVTMV MTIATVLNWI
VEKYIIVSFN IEYLRYIVYI VVIASVVQIL EMVIDRVSPN LYISLGIFLP LITVNCAILG
VVLFMQLRNY SLIQSVFFGL GSGIGWWLAI VLLAAIRIKV DKAPVPAPLK GVGITLITIG
IMAMAFIGFA GMINVQ
|
|---|
| |