Gene Tmel_0561 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTmel_0561 
Symbol 
ID5296653 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermosipho melanesiensis BI429 
KingdomBacteria 
Replicon accessionNC_009616 
Strand- 
Start bp593053 
End bp594057 
Gene Length1005 bp 
Protein Length334 aa 
Translation table11 
GC content35% 
IMG OID640768823 
Productoligopeptide/dipeptide ABC transporter, ATPase subunit 
Protein accessionYP_001305813 
Protein GI150020459 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component 
TIGRFAM ID[TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGCATTGC TTGAAGTAAA AAATTTAAAG ATGCACTATA AAACTAAAAT GGGGTATGTA 
AAAGCCGTTG ATGGAATAAA TTTCACCTTG GATAGTGGTG AAAGTTTGGG AATAGTGGGT 
GAATCTGGAT GTGGGAAGAC GTCTGTTTCA ATGACAATGT TAAGACTTTT GCCAGAAAAT 
GGTGAGTTTA AAGAAGGAAA AGTATTATTT AATGACAATG GAAAAATTGT TGATCTTGTT 
TCCCTTTCAG AAGAAGAGAT GAGAAAGTAT AGATGGAAAG GTCTTGCCAT GGTTTTTCAA 
GCTGCTATGA ATTCGTTGAA TCCAGTGTAC AAGGTTGGTG ATCAAATAGT TGAAGCTATA 
TTAACTCATT ATCCAGAAAT GAGTATTGAC GATGCTAAAA AGAAAGTTGC AAAGTTGTTT 
GAGCTAGTTG GTCTTGATCC AAAAAGAATG GAACAATATC CACACCAATA CAGTGGAGGA 
ATGAAACAAA GAGCTGTTAT TGCGCTTGCT CTATCTTGTG ATCCAAAGGT AATTATTGCT 
GATGAACCAA CAACTGCACT GGATGTTATA GTTCAGGATA AGATTTTAAA GGAAATGAAA 
AAAATACAAA AACAACTAAA TATGGCAATG ATCTATATAT CACATGATAT AGCTGTTATA 
GCCGAAGTTA GTGATAAGAT AGCTGTTATG TATGCTGGAA AGTTTGTTGA ACTTGGAAGT 
TCGCGTGATA TATTTAAAAA TCCAATGCAT CCATATACAT TTTTACTTAT GAATGCATTT 
CCAAGTACAA TTGGTGAAAA GAAAAAATTG TTAACTATCC CAGGAGAACC TCCAAATCTT 
TTAAACCCAC CAAAGGGATG TAGATTTGCA CCGCGATGTC CTTGGGCGAC GGAAAAGTGC 
AAGAATGAAG AGCCGGAATA TAAAGAAATT GAGGATGGAC ACTTTGTAGC ATGTTGGCAT 
CCTTTAAGTG AAGAGGTGAG AAAAGATGCA AAAATTGAGC TCTAA
 
Protein sequence
MALLEVKNLK MHYKTKMGYV KAVDGINFTL DSGESLGIVG ESGCGKTSVS MTMLRLLPEN 
GEFKEGKVLF NDNGKIVDLV SLSEEEMRKY RWKGLAMVFQ AAMNSLNPVY KVGDQIVEAI 
LTHYPEMSID DAKKKVAKLF ELVGLDPKRM EQYPHQYSGG MKQRAVIALA LSCDPKVIIA 
DEPTTALDVI VQDKILKEMK KIQKQLNMAM IYISHDIAVI AEVSDKIAVM YAGKFVELGS 
SRDIFKNPMH PYTFLLMNAF PSTIGEKKKL LTIPGEPPNL LNPPKGCRFA PRCPWATEKC 
KNEEPEYKEI EDGHFVACWH PLSEEVRKDA KIEL