Gene Tmel_0234 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTmel_0234 
Symbol 
ID5298187 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermosipho melanesiensis BI429 
KingdomBacteria 
Replicon accessionNC_009616 
Strand
Start bp238454 
End bp239734 
Gene Length1281 bp 
Protein Length426 aa 
Translation table11 
GC content31% 
IMG OID640768490 
ProductUDP-N-acetylmuramoylalanine--D-glutamate ligase 
Protein accessionYP_001305493 
Protein GI150020139 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0771] UDP-N-acetylmuramoylalanine-D-glutamate ligase 
TIGRFAM ID[TIGR01087] UDP-N-acetylmuramoylalanine--D-glutamate ligase 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGAAGTTTA CTTTGTTGGG TTTTGGATTA AGTAACAAAG AAATTTTTAA ATATCTTGTG 
AAAAATGGGC ATGAAGTTTT TGTAAGTGAG GGGAAAAAAT TAGCTTCTTC TGATAAAAAG
TTGTTATTGG AAAATGGTGT GCAATTTGAA GAAAATGGAC ATACGGAAAA AGCACTTGAA
TGTGATATTA TTTTGGTTAG TCCCGGTGTA CATTTTGAAA ATGAAATAAT AAAAGAGGCG
AAAAGACGGA GTATTGAGAT AGATACGGAG ATCTCCTTTT GTCAGAGAGA ATTTGAAAAA
ATCGGTTGGA CTCCTTTTGT TATAGCAGTT ACAGGTTCTG TGGGGAAGAG CACTACTGTG
TCTTTAATTT ATCATTTGTT AAATAAAAAA GTAAGGGCAT TACTAGCAGG AAATATTGGG
ATTCCAATTG CAAAACTTTT AAACGATAAT TTAAGGGCAA ATTATTTGGT TTTAGAGATA
AGTAGTTTTC AGTTGTTTTG GTCAAAAAGG TTTAAACCAA ATATTTCTTC GATTTTGAAT
ATATATCCTA ATCATCTAAA TTGGCATCCT GATATGGAGC ATTATGTTTC TTCAAAATTT
AAAATTGCAT CTTTTCAAAG TAAAGATGAT GTTTTTGTAT ACAATCCAAA CGATGAGTAT
ATAAGAAAGA ATTTATATAA AGTAAGTGCC AAGAAAGTAC CATTTAGATT CGACTTTTCA
ATTGAAAAAT TACCTATACA TCTTAGATAT AGGCAAACAG TAGAAAATGT GGCTGCTGCA
AAGACTATTT TGGAAACCAT GGGTTATGAA TTTAAATGGG AGTTTTTGGA AGATTTTGAA
AAATTACCGC ACAGAATGGA GTATGTTACG GAAATAAACG GAGTGAAATT TTTCAACGAT
TCTAAAGCTA CAAATGCAAT TGCCGTAATC CGTGCTATTG AAAATTTTGA TGATAAATTA
CATTTAATAA TGGCGGGAAT AGGTAAGAAT GAAGATTATA CATTACTTGC AAAGATAATT
AAAGAAAAGG TAAAGATTTT GGCATTAGTA GGTCCAATAG CAGATGAGAT AGAGCCTTAT
CTTGATGGTG TTAGATATTT TAAAGTTGAT ACGATAAATC AAGCGGTAAA TCAATTGTTT
TCAATGGCTT CTAGAGGGGA TGTTATTATG CTGAGTCCAG GTGGTGCAAG TTTTGATGCG
TTTAAAAATT TTGAAGAACG TGGAGAATAT TTTAAGCAAC TTGTTATGCA ATTAAAGGAG
GGAAATTGTG AAGAATGTTA G
 
Protein sequence
MKFTLLGFGL SNKEIFKYLV KNGHEVFVSE GKKLASSDKK LLLENGVQFE ENGHTEKALE 
CDIILVSPGV HFENEIIKEA KRRSIEIDTE ISFCQREFEK IGWTPFVIAV TGSVGKSTTV
SLIYHLLNKK VRALLAGNIG IPIAKLLNDN LRANYLVLEI SSFQLFWSKR FKPNISSILN
IYPNHLNWHP DMEHYVSSKF KIASFQSKDD VFVYNPNDEY IRKNLYKVSA KKVPFRFDFS
IEKLPIHLRY RQTVENVAAA KTILETMGYE FKWEFLEDFE KLPHRMEYVT EINGVKFFND
SKATNAIAVI RAIENFDDKL HLIMAGIGKN EDYTLLAKII KEKVKILALV GPIADEIEPY
LDGVRYFKVD TINQAVNQLF SMASRGDVIM LSPGGASFDA FKNFEERGEY FKQLVMQLKE
GNCEEC