| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmel_0044 |
|---|
| Symbol | |
|---|
| ID | 5296785 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermosipho melanesiensis BI429 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009616 |
|---|
| Strand | - |
|---|
| Start bp | 47224 |
|---|
| End bp | 47790 |
|---|
| Gene Length | 567 bp |
|---|
| Protein Length | 188 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 29% |
|---|
| IMG OID | 640768296 |
|---|
| Product | riboflavin synthase subunit alpha |
|---|
| Protein accession | YP_001305308 |
|---|
| Protein GI | 150019954 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0307] Riboflavin synthase alpha chain |
|---|
| TIGRFAM ID | [TIGR00187] riboflavin synthase, alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTAGTG GTATTATCGA GCATTGTACA AGAGATTTTC TTTTAAGAAA TGGGGAGTTG
GAAATAAAAC TTCCTTTTAA GTGTGAAATA GGGGATAGTG TTAGTGTAAA TGGGGTATGT
TTGACGGTAA AAAGAGTATA TAATTTTTGG CATTATTTTG ATGTAGGAAA TGAAACTATG
AAAATTACAA ATCTTTCTTT TTCGAAATAT TTAAATATAG AACGTGCCTT AAAGATAGGT
GATAGGTTAA ACGGTCATTT TGTGATGGGA CATGTAGATG GATTAATTAG ATTAGTAAAA
ACTGTTAAAT TATTTTCAAC TGTATATATG TATTTCACAT TACCAAAGGA GAGATTTGCA
ATTGTTCGGA AAGGGTCAAT TGCATTAAAT GGAATAAGTT TGACTATCTC AAATGTAAGT
TTAGATGTTT TTGAAGTACA AGTTATACCA CACACCTTTG AAAATACAAA TTTGAAATAT
TTAGATATAG GTGAGTTGGT AAATTATGAA ATTGATATTT TTGCAAGATA TGGAGGGAAA
AAGAATGAAA CCATTTATTT TGATTGA
|
|---|
| Protein sequence | MFSGIIEHCT RDFLLRNGEL EIKLPFKCEI GDSVSVNGVC LTVKRVYNFW HYFDVGNETM
KITNLSFSKY LNIERALKIG DRLNGHFVMG HVDGLIRLVK TVKLFSTVYM YFTLPKERFA
IVRKGSIALN GISLTISNVS LDVFEVQVIP HTFENTNLKY LDIGELVNYE IDIFARYGGK
KNETIYFD
|
|---|
| |