Gene Tmel_0037 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTmel_0037 
Symbol 
ID5297165 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermosipho melanesiensis BI429 
KingdomBacteria 
Replicon accessionNC_009616 
Strand+ 
Start bp40481 
End bp41539 
Gene Length1059 bp 
Protein Length352 aa 
Translation table11 
GC content31% 
IMG OID640768287 
Product1-deoxy-D-xylulose 5-phosphate reductoisomerase 
Protein accessionYP_001305301 
Protein GI150019947 
COG category[I] Lipid transport and metabolism 
COG ID[COG0743] 1-deoxy-D-xylulose 5-phosphate reductoisomerase 
TIGRFAM ID[TIGR00243] 1-deoxy-D-xylulose 5-phosphate reductoisomerase 


Plasmid Coverage information

Num covering plasmid clones3 
Plasmid unclonability p-value0.000227985 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATGAAA AAACCGTTGT AATTTTAGGT GCCACCGGTT CAATTGGAAC ACAAACATTG 
GATGTAATAA ACAAATTAAA TAGCTACAAG GTTGTTGGTA TCGTTTTTGG AAAAAATAAA 
TTACTTGGTG AAAAAATAAT AAAACAATAC AGTATAAAAT ACTATTTTTC AAAAAGACTT 
TCAAACGTAA GTTCTATAAC TGAATTGCTG GAAAAGACAA GACCAGATAT AGTCATTTCC 
GCAATACCAG GCTTTTACGG TGTAGTTACC TCATTTGAAG CAGCAAAACA CACCAAAAGA 
ATAGCACTTG CAAATAAAGA AGCCTTGGTA TGTGCTGGTC CTTTCTTTAA AAAAGAGTGT 
GAAAAAAATA ACGTCGAATT GATACCAGTG GATAGTGAAC ATTCAGCCAT ATTCCAAATA 
TTCGGAAAAA ATGTTGAAAA AATTCTTATC ACCGCATCTG GTGGTGCAGT AAGAAACTAC 
AAAAACATAG AAAATTTAAC ACCTTCGGAT ATTTTAAACC ACCCAGTATG GAATATGGGA 
CAAAAAATTA CAGTTGATTC CTCAACAATG GTCAATAAAG CCTTTGAAGT GATCGAAGCA 
TATGAATTAT TTGAAGTAGA CAACATTGAA GTATTAATAC ATCCGACTGG AACAGTTCAC 
GGAGCAGTAT TCTATAAAGA TGGCGTTGTA AAAATACATT TTGGTTTTCC AGATATGAAA 
ATACCAATTT CATATGCACT AACCTATCCA AATAGGTGTT ACACATATAG TAAATGGCCT 
AAATTTTCAA GCAAAAATTT TATTTTTGAA AAAGTAGATG AAAAAAAATA TCCCGCATTT 
TTCTATGGAA AAAAACTTAT AAACAACCTT GCAAAAAGAA TAGCATTTAA CGCAGCAGAT 
GAAATAGCAG TTGAAAAATT TTTGCAAGGA AAAATAAAAT TTCACGAAAT TTCAAAGATA 
ATAATAAACA CATGTGAAAA AATAGACGGA AATGTAAGAG ATCTAAATGA CATTTTTGAA 
TTAGACAAAC TAGCTAGAAA AATTGCAAAT AATTTTTAA
 
Protein sequence
MDEKTVVILG ATGSIGTQTL DVINKLNSYK VVGIVFGKNK LLGEKIIKQY SIKYYFSKRL 
SNVSSITELL EKTRPDIVIS AIPGFYGVVT SFEAAKHTKR IALANKEALV CAGPFFKKEC 
EKNNVELIPV DSEHSAIFQI FGKNVEKILI TASGGAVRNY KNIENLTPSD ILNHPVWNMG 
QKITVDSSTM VNKAFEVIEA YELFEVDNIE VLIHPTGTVH GAVFYKDGVV KIHFGFPDMK 
IPISYALTYP NRCYTYSKWP KFSSKNFIFE KVDEKKYPAF FYGKKLINNL AKRIAFNAAD 
EIAVEKFLQG KIKFHEISKI IINTCEKIDG NVRDLNDIFE LDKLARKIAN NF