Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tgr7_3225 |
Symbol | |
ID | 7315598 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thioalkalivibrio sp. HL-EbGR7 |
Kingdom | Bacteria |
Replicon accession | NC_011901 |
Strand | - |
Start bp | 3372510 |
End bp | 3376055 |
Gene Length | 3546 bp |
Protein Length | 1181 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 643618124 |
Product | putative type 4 fimbrial biogenesis protein PilY1 |
Protein accession | YP_002515280 |
Protein GI | 220936381 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3419] Tfp pilus assembly protein, tip-associated adhesin PilY1 |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAGGTGCA AAGATAACAA GTGGGTTAAG CGTGCTCAGG CCGCTCTGGC GGGAATGGCT TGTGCCCTTA TGACCGTGTC TCCGGGTCTC GCACAGGCAA ACGTAAATAT TGCGAATGTC CCATTGTTCC TGACAACGAG TATTGATCCG AACATCATGT TCATCCTGGA CGACTCGGGT TCGATGCATT GGGAAATCAT GCCTGATCAG CATATCAGTA ATGCCGCTTA CTACGTCTAC GGCCGCATAG ATAACCTATA CAGCAGCGGG AATTACACGG ACAGAGCGCC GACCTTTGCT GACGACCCTT ACAACGCGTT CGCGCGATCT CCTGTTGGAA ACACCGTCTA CTATGATCCA GGTGTGACCT ATAGTCCCTG GCCTAGGGCA GATGGTAGCG GGTCAATGCC CAATGCCAAC CCATCTGCCG CGCTGCACAA TCCGATGCGC CCAGCGCGAG GGAGTCGTAA TCTCACGGCT AACAATACAC GCAATGGTAG TTGGCGACGT TGTAGCACCA TTACGCGTGA TGTCAGCGGT ACATTTAATT TTTCAGGCTG TGCGACTTTC ACTGCGACTC AGACATTCTG GCCGGCTGTC TATTATTGGC ACGACGGTTC TGATGGCTAC GACTTCAGTA ATTACGAGAG GGTCGAGATA CGATCAGACA CCCCCTTTTA CACGGATCAC GGACGTGAGA ATCGGACCGA TTGTGCTAGC GCAGCGACTG CCACCTGTAC ATATGACGAA GAGATACAAA ACTTCGCAAA CTGGTACACA TACTATCGCT CGCGAATCCT CGCGGCACGC GGGGGCATCG GCCTGGCCTT TGCCGAGCAA CCGGAAAATA TGCGTGTCGG TTACGGTACG ATCAATGCGG GCAGTTCGAG TGTCGATGGG GTAACAACCG AAAAGATCGT ACGCGGGGTA CGCGCCTTTT CCGGCGCGGA CAGGCAGGCT TTCTTCGATT TGCTCTATGA CCGAGACATC CCCGCGGCCG GAACGCCACT AAGAAGATCA CTTGAGGCTG CGGGTGAGTA TTTCCGGCGA AGTGACAGTC GCGGCCCTTG GAGTACGACT CCTGGTTTAT CAGGCGGTGA AGATCTGAGC TGCCGTCAGA GCTTTGCCAT CTTGATGACG GATGGATACT GGAATGGTCC TAATCCCTCT GATGCAATTG GCAATGCCGA TAACTCGTCC GGGCCGCTTC ATGTAAACCC GAACGGCGAT AACTTCCAGT ACGTTCCAAG TGATCCGTTC CGGGATGGCG TCTCGCGTAC ACTCGCAGAC GTGGCCATGT ATTACTGGAA GAACGATCTG CGGCCGGATA TGGATAACAA CGTCCCTAGC AACGCCCGTA ACCCTGCATT TTGGCAGCAT ATGGTGACCT ATGGTATTGG TTTGGGGGTA ACAGGATCCG TTGATCCCGA TGATGCTTGG CAGGCAGTAA CGGACGGCAC GGCAATCAAC TGGCCTGATC CGTACAATAG TGACCCAGCA AAAATTGATG ATCTATTGCA TGCTGGAGTT AACAGCCGCG GCGGATTCTT CAGCGCCCAG AACCCTGTCG CTTTCGCCAA CGAGTTGGCG CAGGTCTTGG AAGACATCAT CGGGCGAGTA GAGGATTCGG CCACCTCAGC GGCCGCCAGC GCTGCAGTCA TTCAGGCAGA TACCTTGCTT TATCTCGCGG GCTTTCGCAG CGGCGACTGG ACCGGTGAAC TGAAGGCCTT CCAGATTATG GGTGACGGCA GCGTTGGCGC ACTTGCTTGG GATGCGGAAG CGCGGCTTGC CGCAATGACG CCGTCCGAGC GCAACCTGTA CACGGCGAAC AGTGCCACCG GAAATGCCGT TTCGTTTGAT TTCGCCCAGT TGAGCCCGGC ACAGCAGGCG GCACTGAATC GTGCCACCGA CGACTCCCTT GATGGCCGAG GTGATGACCG CATCGACTGG CTGCGGGGAG AATCGGTAAC GGAATTCCGC AGTCGCACTA CGCCTCTGGG AGAGCGGCGA CTTCTGGGTG ACATCGTGCA CTCCTCGCCA CAGTTCGTCG GCCGGCCGAA CCTGGGTTAC AGTCTGCTCC CTGGTGCTGA GGGCTCGGCC TACAGCACAT TCCGTTCGAG CTCGCCTTAT TCTTCGCGAC CATCGGCCAT TTATGTCGGG GCAAACGATG GATTGCTGCA CGCCTTCCAT GGCACCACCG GAGGAGAACT CTTCGCTTAC ATGCCTTCCG AGCTTCTTTT GCCGGAAACC GGGCACCAGC ATGCCCGGAT CAATCGCCTG ATGGATCCGG ACTACGCCCA CAGATACTTC GTGGATGGCG CTGCGACCAT TGGTGATGTT TATGTCGGTG GGAGTTGGAA GACTGTGCTT ATCGGTACCA TGGGTGCCGG CGGACGGACG GTCTTTGCGT TGGACGTCAC AGACCCTACG AACTTCGATG AATCCAAGGT GCTTTGGGAA TTCACCCACC CTGGGCTGGG TTATGGTGTG ACGAATCCAT CTATCGTGCG CATGCGAAAC GGACAGTGGG CAGCCGTGTT TGGAAACGGC TACAACAGTG CCAATCACAC CGCCGGTCTG TTTATCGTAC CCATTGGCAA TCCGTCATCC TATGTATTTG TGGATACGGG GGTGGGGAAC AGCACGACGC CGAATGGCTT GGCGCCCGTG GTGGTGACTG ACGCGCCCAG TGGCGATCTC AATGCGCGGC TTGTATACGC AGGAGATCTC CAAGGGCGGA TGTGGCGCTT CGACGTGTCG TCGACTAACC CCAATCAATG GAATAACGCC GGAAATCGCT CGGTGCTTTT CCAGGCGCGT GATGCCAGTG ATGTACCTCA GCCAATTACG GCAAGGGCCC AGGTGACCGC GCATCCCACT GAACAGGGTA CGCTCATGGT TCTCTTTGGT ACCGGTAGTT ACTTTAGAAC ACAGGATGGT GATTTGACTG CCCCACAGGT TCAGAGTCTC TATGGACTAA AGGATCAGAA TGGTGCCGCC ATCTCTAGTC GAAATGATCT CGTAGAACAG GTGATCGTGT GGCAGGGTGA TCAAACATTC ACCACGTCAG ATGGGGATGT GACCTATACG CTGCGGCAAG TGTCCGAAGA GACAGTGACT ACAGCTGACA AGGGTTGGTA TCTGGATCTG GTCTATGAGG GCAACAACCA GGGTGAACGG GTCATCAGTG AGCCCACATT TCCCTCTGGG CCCGTTGGTG AGCGCGTTCG ATTTGCAACA ATGATTCCTG ACGAGGATCC TTGTGGTACT GGCCGCCGTG GCTTCCTGAT GGACATCATG CTCGCTACTG GCGGGGCAGT ACCTTACACC GTGTTTGATC TTGACCAGGA TGGTGTGTTC GATAGCGGAG ATTATGTGAA TAACTTACCC GTCAGCGGTG TCGGTTTCGG CGGGGGCGAG AAGCCAACAA CCGTTCTGAA CCCGGACACG GGCATCGACC ATATTTTCGG TGGTCAGGGT GATGACCTTC GTGGCCTGCC AGGTGGACAG GCCTCTGGTC GCCAATCCTG GCGGCAGTTG CGTTGA
|
Protein sequence | MRCKDNKWVK RAQAALAGMA CALMTVSPGL AQANVNIANV PLFLTTSIDP NIMFILDDSG SMHWEIMPDQ HISNAAYYVY GRIDNLYSSG NYTDRAPTFA DDPYNAFARS PVGNTVYYDP GVTYSPWPRA DGSGSMPNAN PSAALHNPMR PARGSRNLTA NNTRNGSWRR CSTITRDVSG TFNFSGCATF TATQTFWPAV YYWHDGSDGY DFSNYERVEI RSDTPFYTDH GRENRTDCAS AATATCTYDE EIQNFANWYT YYRSRILAAR GGIGLAFAEQ PENMRVGYGT INAGSSSVDG VTTEKIVRGV RAFSGADRQA FFDLLYDRDI PAAGTPLRRS LEAAGEYFRR SDSRGPWSTT PGLSGGEDLS CRQSFAILMT DGYWNGPNPS DAIGNADNSS GPLHVNPNGD NFQYVPSDPF RDGVSRTLAD VAMYYWKNDL RPDMDNNVPS NARNPAFWQH MVTYGIGLGV TGSVDPDDAW QAVTDGTAIN WPDPYNSDPA KIDDLLHAGV NSRGGFFSAQ NPVAFANELA QVLEDIIGRV EDSATSAAAS AAVIQADTLL YLAGFRSGDW TGELKAFQIM GDGSVGALAW DAEARLAAMT PSERNLYTAN SATGNAVSFD FAQLSPAQQA ALNRATDDSL DGRGDDRIDW LRGESVTEFR SRTTPLGERR LLGDIVHSSP QFVGRPNLGY SLLPGAEGSA YSTFRSSSPY SSRPSAIYVG ANDGLLHAFH GTTGGELFAY MPSELLLPET GHQHARINRL MDPDYAHRYF VDGAATIGDV YVGGSWKTVL IGTMGAGGRT VFALDVTDPT NFDESKVLWE FTHPGLGYGV TNPSIVRMRN GQWAAVFGNG YNSANHTAGL FIVPIGNPSS YVFVDTGVGN STTPNGLAPV VVTDAPSGDL NARLVYAGDL QGRMWRFDVS STNPNQWNNA GNRSVLFQAR DASDVPQPIT ARAQVTAHPT EQGTLMVLFG TGSYFRTQDG DLTAPQVQSL YGLKDQNGAA ISSRNDLVEQ VIVWQGDQTF TTSDGDVTYT LRQVSEETVT TADKGWYLDL VYEGNNQGER VISEPTFPSG PVGERVRFAT MIPDEDPCGT GRRGFLMDIM LATGGAVPYT VFDLDQDGVF DSGDYVNNLP VSGVGFGGGE KPTTVLNPDT GIDHIFGGQG DDLRGLPGGQ ASGRQSWRQL R
|
| |