Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tgr7_3129 |
Symbol | |
ID | 7317359 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thioalkalivibrio sp. HL-EbGR7 |
Kingdom | Bacteria |
Replicon accession | NC_011901 |
Strand | + |
Start bp | 3279295 |
End bp | 3280959 |
Gene Length | 1665 bp |
Protein Length | 554 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 643618028 |
Product | choline/carnitine/betaine transporter |
Protein accession | YP_002515185 |
Protein GI | 220936286 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1292] Choline-glycine betaine transporter |
TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.32452 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGGACAACA AAACTGACAA ATCCCCGGAG AATCCGAACC AGTCTGTCGG CGTGCCCGCA CCGGAGGGTG CCGCCAACCT GATCGACACC GATTACCAGA TCGGCCAGGA CAACTACCAG GCCAGTCCGC TGGGCGTGAA CATCGATATC CACGGCGCGG TTTTCGCCAT CTCCGCCCTG GTGATCATCG CCTTCGTGGT GCTTACCCTG GCCCTGCCCG AGCAGGCCAC CGCCGTCTTC GACGGCATGA AGAACTGGAT CAACAGCAAC ATGACCTGGT TCATGCTGCT GTCGGCCAAC ATCTTTGTGC TGCTGTGTCT GTTTCTGATC ATCTCGCCCC TGGGGCGCAT TCGTATCGGC GGTGACAAGG CGACACCGGA CTTCTCGCGG TTGTCGTGGT TCTCCATGCT GTTTGCCGCG GGCATGGGCA TTGGCCTGAT GTTCTTCGGC GTGTCCGAAC CCCTGTCCCA TTACGGCACC GCCCTGGGCG GGACCAGCGT CGGCGAGGAC GGCATCCGCA CCGACTGGGC GCCCCTGGGC GCAGCCGCGG GCGATCCAGC GGCGGCCGCG CGTCTCGGCA TGGCCGCGAC CATCTTCCAC TGGGGCCTGC ATCCCTGGGC GATCTACGCC ATCGTGGCCC TGTCCCTGGC CATCTTCGCC TACAACAAGG GGCTGCCCCT GACCATCCGC TCGATCTTCT ACCCCCTGCT GGGCGAGCGG ATCTGGGGGT GGCCGGGGCA CGTCATCGAC ATCCTCGCGG TGTTCGCCAC CCTGTTCGGC CTGGCCACGT CACTGGGTAT CGGCGCGCAG CAGGCATCCG CCGGACTGGA ACACCTGTTC GGCATCGACG GCGGCAACAT CACACTGGTG CTGCTGATCA CCGGCATCAC CGCCGTGGCG GTGATCTCCA TCGTGGCCGG CGTGGACAAG GGCGTGAAGC GCCTGTCCGA GATCAACATG GTGCTGGCCT TCCTGCTGCT GATGTTCGTG GTGATCTTCG GACCCACCCT GCTGATCGCC ACCGGCTTCA TCAGCAACCT GGGCAGCTAC CTGATGGAAC TGCCGTTCCT GTCCAATCCC TTTGCCCGTG ACGACGCCAA CTTCAGCCAG GGCTGGACCA CCTTCTACTG GGCCTGGTGG ATCAGCTGGT CACCCTTCGT GGGCATGTTC ATCGCCCGCG TGAGCCGCGG CCGCACGGTG AGGGAGTTCC TGATCTCGGT GCTGCTGATC CCTTCCGCCG TGTCCGTGTT CTGGATGACG GCCTTCGGCG GGACCGCCAT CCGTCAGCTC CAGCAGGGCT TCGAGGCCGC CGCCTCCGCA GACCTGCCGC TGCAGCTGTT CATGGTGCTA AGTCAACTTC CCCTCGCCGA GATCACCTCC TTTGTCGCCA TCATCCTGGT GCTGGTGTTC TTCATCACCT CCTCGGACTC CGGCTCCCTG GTGATCGACA CCATCACCGC CGGCGGCAAG ATCGACGCAC CCAAACCCCA GCGCGTATTC TGGGGCGTGA TCGAGGGGGC CATCGCCATC GCCCTGCTGC TGGGCGGCGG CCTGGCCGCC CTGCAGGCGG TGGCGGTCTC CGCGGGCCTG CCCTTCACCC TGGTCCTGCT GGTGGGGTGT TTCGCCATCG TCAAGGGATT GATGTCGGAG CCCAGGCCTA GCTGA
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Protein sequence | MDNKTDKSPE NPNQSVGVPA PEGAANLIDT DYQIGQDNYQ ASPLGVNIDI HGAVFAISAL VIIAFVVLTL ALPEQATAVF DGMKNWINSN MTWFMLLSAN IFVLLCLFLI ISPLGRIRIG GDKATPDFSR LSWFSMLFAA GMGIGLMFFG VSEPLSHYGT ALGGTSVGED GIRTDWAPLG AAAGDPAAAA RLGMAATIFH WGLHPWAIYA IVALSLAIFA YNKGLPLTIR SIFYPLLGER IWGWPGHVID ILAVFATLFG LATSLGIGAQ QASAGLEHLF GIDGGNITLV LLITGITAVA VISIVAGVDK GVKRLSEINM VLAFLLLMFV VIFGPTLLIA TGFISNLGSY LMELPFLSNP FARDDANFSQ GWTTFYWAWW ISWSPFVGMF IARVSRGRTV REFLISVLLI PSAVSVFWMT AFGGTAIRQL QQGFEAAASA DLPLQLFMVL SQLPLAEITS FVAIILVLVF FITSSDSGSL VIDTITAGGK IDAPKPQRVF WGVIEGAIAI ALLLGGGLAA LQAVAVSAGL PFTLVLLVGC FAIVKGLMSE PRPS
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