Gene Tgr7_3129 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTgr7_3129 
Symbol 
ID7317359 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThioalkalivibrio sp. HL-EbGR7 
KingdomBacteria 
Replicon accessionNC_011901 
Strand
Start bp3279295 
End bp3280959 
Gene Length1665 bp 
Protein Length554 aa 
Translation table11 
GC content65% 
IMG OID643618028 
Productcholine/carnitine/betaine transporter 
Protein accessionYP_002515185 
Protein GI220936286 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1292] Choline-glycine betaine transporter 
TIGRFAM ID[TIGR00842] choline/carnitine/betaine transport 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.32452 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGACAACA AAACTGACAA ATCCCCGGAG AATCCGAACC AGTCTGTCGG CGTGCCCGCA 
CCGGAGGGTG CCGCCAACCT GATCGACACC GATTACCAGA TCGGCCAGGA CAACTACCAG
GCCAGTCCGC TGGGCGTGAA CATCGATATC CACGGCGCGG TTTTCGCCAT CTCCGCCCTG
GTGATCATCG CCTTCGTGGT GCTTACCCTG GCCCTGCCCG AGCAGGCCAC CGCCGTCTTC
GACGGCATGA AGAACTGGAT CAACAGCAAC ATGACCTGGT TCATGCTGCT GTCGGCCAAC
ATCTTTGTGC TGCTGTGTCT GTTTCTGATC ATCTCGCCCC TGGGGCGCAT TCGTATCGGC
GGTGACAAGG CGACACCGGA CTTCTCGCGG TTGTCGTGGT TCTCCATGCT GTTTGCCGCG
GGCATGGGCA TTGGCCTGAT GTTCTTCGGC GTGTCCGAAC CCCTGTCCCA TTACGGCACC
GCCCTGGGCG GGACCAGCGT CGGCGAGGAC GGCATCCGCA CCGACTGGGC GCCCCTGGGC
GCAGCCGCGG GCGATCCAGC GGCGGCCGCG CGTCTCGGCA TGGCCGCGAC CATCTTCCAC
TGGGGCCTGC ATCCCTGGGC GATCTACGCC ATCGTGGCCC TGTCCCTGGC CATCTTCGCC
TACAACAAGG GGCTGCCCCT GACCATCCGC TCGATCTTCT ACCCCCTGCT GGGCGAGCGG
ATCTGGGGGT GGCCGGGGCA CGTCATCGAC ATCCTCGCGG TGTTCGCCAC CCTGTTCGGC
CTGGCCACGT CACTGGGTAT CGGCGCGCAG CAGGCATCCG CCGGACTGGA ACACCTGTTC
GGCATCGACG GCGGCAACAT CACACTGGTG CTGCTGATCA CCGGCATCAC CGCCGTGGCG
GTGATCTCCA TCGTGGCCGG CGTGGACAAG GGCGTGAAGC GCCTGTCCGA GATCAACATG
GTGCTGGCCT TCCTGCTGCT GATGTTCGTG GTGATCTTCG GACCCACCCT GCTGATCGCC
ACCGGCTTCA TCAGCAACCT GGGCAGCTAC CTGATGGAAC TGCCGTTCCT GTCCAATCCC
TTTGCCCGTG ACGACGCCAA CTTCAGCCAG GGCTGGACCA CCTTCTACTG GGCCTGGTGG
ATCAGCTGGT CACCCTTCGT GGGCATGTTC ATCGCCCGCG TGAGCCGCGG CCGCACGGTG
AGGGAGTTCC TGATCTCGGT GCTGCTGATC CCTTCCGCCG TGTCCGTGTT CTGGATGACG
GCCTTCGGCG GGACCGCCAT CCGTCAGCTC CAGCAGGGCT TCGAGGCCGC CGCCTCCGCA
GACCTGCCGC TGCAGCTGTT CATGGTGCTA AGTCAACTTC CCCTCGCCGA GATCACCTCC
TTTGTCGCCA TCATCCTGGT GCTGGTGTTC TTCATCACCT CCTCGGACTC CGGCTCCCTG
GTGATCGACA CCATCACCGC CGGCGGCAAG ATCGACGCAC CCAAACCCCA GCGCGTATTC
TGGGGCGTGA TCGAGGGGGC CATCGCCATC GCCCTGCTGC TGGGCGGCGG CCTGGCCGCC
CTGCAGGCGG TGGCGGTCTC CGCGGGCCTG CCCTTCACCC TGGTCCTGCT GGTGGGGTGT
TTCGCCATCG TCAAGGGATT GATGTCGGAG CCCAGGCCTA GCTGA
 
Protein sequence
MDNKTDKSPE NPNQSVGVPA PEGAANLIDT DYQIGQDNYQ ASPLGVNIDI HGAVFAISAL 
VIIAFVVLTL ALPEQATAVF DGMKNWINSN MTWFMLLSAN IFVLLCLFLI ISPLGRIRIG
GDKATPDFSR LSWFSMLFAA GMGIGLMFFG VSEPLSHYGT ALGGTSVGED GIRTDWAPLG
AAAGDPAAAA RLGMAATIFH WGLHPWAIYA IVALSLAIFA YNKGLPLTIR SIFYPLLGER
IWGWPGHVID ILAVFATLFG LATSLGIGAQ QASAGLEHLF GIDGGNITLV LLITGITAVA
VISIVAGVDK GVKRLSEINM VLAFLLLMFV VIFGPTLLIA TGFISNLGSY LMELPFLSNP
FARDDANFSQ GWTTFYWAWW ISWSPFVGMF IARVSRGRTV REFLISVLLI PSAVSVFWMT
AFGGTAIRQL QQGFEAAASA DLPLQLFMVL SQLPLAEITS FVAIILVLVF FITSSDSGSL
VIDTITAGGK IDAPKPQRVF WGVIEGAIAI ALLLGGGLAA LQAVAVSAGL PFTLVLLVGC
FAIVKGLMSE PRPS