| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tgr7_2024 |
|---|
| Symbol | |
|---|
| ID | 7316413 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thioalkalivibrio sp. HL-EbGR7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011901 |
|---|
| Strand | - |
|---|
| Start bp | 2145951 |
|---|
| End bp | 2147978 |
|---|
| Gene Length | 2028 bp |
|---|
| Protein Length | 675 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 643616916 |
|---|
| Product | DNA ligase (NAD(+)) |
|---|
| Protein accession | YP_002514091 |
|---|
| Protein GI | 220935192 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
|---|
| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.00334946 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGAGA TCCCCGAGAA GGTTCGCAAG CGGGTCGCCT CACTGCGCGA CGAGCTGGAC
TATCACAATC ACCGTTACTA CGTGCTGGAC GACCCGGAGA TCCCGGACGC CGCCTATGAC
GCGCTGATGC GCGAGCTGCA GGATCTGGAG GCGAAGTATC CCGAGCTGGT GACGCCGGAC
TCGCCCACCC AGCGGGTGGG CGGTGCGCCG CTCAAGGCCT TCGAGGAGGC CAGGCACCTG
CTGCCCATGC TGTCCCTGGA CAACGCCTTC GAGGAAGCCG ACGTGCTCGC CTTCGAGAAG
CGCATCCGGG ACCGGCTGGG GGAAGAATCC GAGATCGAGT TTGCCGTGGA GCCCAAGCTG
GATGGACTCG CCATCAGCCT GCTCTATGAG GATGGCCACC TGGTGCGCGG CGCCACCCGC
GGCGACGGCG CCACCGGCGA GGACGTCACC GCCAACGTGC GCACCATCCG CGCCATCCCG
CTCAGGCTCC AGGGCCGGGG CTGGCCGAAG CTGCTGGAGG TGCGTGGCGA GGTGTACATG
GACCGGGCCG GTTTCGAGGC CTTCAACCGC GAGGCGGCTT CGAGGGGCGA GAAGGTGTTC
GTCAACCCCC GCAACGCCGC CGCCGGCAGC CTGCGTCAGC TGGATTCCCG CATCACCGCG
AAGCGTCCGC TCACCTTCTT CGCCTACGGC GCCGGTCACG TGGAGGGCGG CGAACTGCCG
GACACCCACG CGGCGGTGCT CGACGCCCTG GCCGAATGGG GGCAGCGGGT GTGCCCCGAG
CGGGACGTGG TGACCGGCGC GGCCGGCTGT CTCGAGTATT ACCGGCGCAT CGGCGAGCGC
CGCGACGGCC TGCCCTATGA CATCGATGGC GTGGTCTACA AGGTCAACCG CTTCGAGCTG
CAGCAGCGTC TGGGCTTCGT CTCCCGCGCG CCGCGCTGGG CCATCGCCCA CAAGTATCCC
GCCCAGGAGC AGATGACGCT GCTGCGCGAC GTGGAATTCC AGGTGGGCCG CACCGGCGCG
CTCACCCCGG TGGCGCGGCT CGAACCGGTG TTCGTGGGTG GCGTGACCGT GAGCAACGCC
ACGCTGCACA ACATGGACGA GGTGGAGCGT AAGGACGTGC GCATCGGCGA CACGGTGATC
GTGCGCCGCG CCGGCGACGT GATCCCCGAG GTGGCGGCGG TGGTGCTCTC CAGACGCCCG
CACAATGCGC GTCACGTGGT AATGCCCACA CACTGCCCGG TCTGCGGTTC CGAGATCGTG
CGCTCGGAAG GCGAGGCGGT GGCCCGGTGT TCCGGCGGTC TGTACTGTGC CGCCCAGCGC
CGCGAGGCCA TCAAGCACTT CGCCTCGCGC CGCGCCATGG ACATTGAGGG CCTGGGCGAC
AAGCTGGTGG AACAGCTGGT GGACGCGGGC CTGGTGGATC ATGTGGACGG CCTGTACCGG
CTCACGGCGG AACAGCTGGC GGGCCTGGAG CGCATGGGCG AGAAGTCTGC CCACAACCTG
GTGGATGCCC TGGAGAAGAG CAAGCACACC CAGTTGGCGC GGTTCATCTT CGCGCTCGGC
ATCCGCGAGG TGGGCGAGGC CACGGCCCGC GCCCTGGCGA TCCATTTCGG TGGCCTGGAT
GCGCTCATGG CCGCCGACGA GGAGGCCCTC ATGCAGGTGC CCGACGTGGG TCCGGTGGTG
GCCCACCACG TGGCCACCTT CTTCCAGCAG CCCCACAACC GCGAGGTGAT CGACGCCCTG
CGTGAGGCCG GCGTGCACTG GGAGGAAAGC GAACCCGCGG CTCTCCAGGC CGAGGACCTG
CCCCTGTCCG GCAATACCTA CGTGCTCACC GGCGCGCTGG AATCCATGAC CCGGGAGGAG
GCCGGCGATC GCCTCATGGC CCTGGGCGCC AAGGTGAGCG GCAGCGTGTC GAAAAAGACC
ACCGCCGTGA TCGCCGGCGA GGCGGCGGGC TCGAAACTGG CCAAGGCGGA GAAGCTGGGC
GTGCCGGTGT TGAGCGAGGC TGAGTTCCTT GAGTTGATAG GGGAGTGA
|
|---|
| Protein sequence | MSEIPEKVRK RVASLRDELD YHNHRYYVLD DPEIPDAAYD ALMRELQDLE AKYPELVTPD
SPTQRVGGAP LKAFEEARHL LPMLSLDNAF EEADVLAFEK RIRDRLGEES EIEFAVEPKL
DGLAISLLYE DGHLVRGATR GDGATGEDVT ANVRTIRAIP LRLQGRGWPK LLEVRGEVYM
DRAGFEAFNR EAASRGEKVF VNPRNAAAGS LRQLDSRITA KRPLTFFAYG AGHVEGGELP
DTHAAVLDAL AEWGQRVCPE RDVVTGAAGC LEYYRRIGER RDGLPYDIDG VVYKVNRFEL
QQRLGFVSRA PRWAIAHKYP AQEQMTLLRD VEFQVGRTGA LTPVARLEPV FVGGVTVSNA
TLHNMDEVER KDVRIGDTVI VRRAGDVIPE VAAVVLSRRP HNARHVVMPT HCPVCGSEIV
RSEGEAVARC SGGLYCAAQR REAIKHFASR RAMDIEGLGD KLVEQLVDAG LVDHVDGLYR
LTAEQLAGLE RMGEKSAHNL VDALEKSKHT QLARFIFALG IREVGEATAR ALAIHFGGLD
ALMAADEEAL MQVPDVGPVV AHHVATFFQQ PHNREVIDAL REAGVHWEES EPAALQAEDL
PLSGNTYVLT GALESMTREE AGDRLMALGA KVSGSVSKKT TAVIAGEAAG SKLAKAEKLG
VPVLSEAEFL ELIGE
|
|---|
| |