Gene Tgr7_1556 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTgr7_1556 
Symbol 
ID7316180 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThioalkalivibrio sp. HL-EbGR7 
KingdomBacteria 
Replicon accessionNC_011901 
Strand- 
Start bp1670168 
End bp1671154 
Gene Length987 bp 
Protein Length328 aa 
Translation table11 
GC content67% 
IMG OID643616447 
ProductTRAP transporter solute receptor TAXI family protein 
Protein accessionYP_002513627 
Protein GI220934728 
COG category[R] General function prediction only 
COG ID[COG2358] TRAP-type uncharacterized transport system, periplasmic component 
TIGRFAM ID[TIGR02122] TRAP transporter solute receptor, TAXI family 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACCTGT CACGCATGCG TCGTTCCCTG CTCACGCTCC TGTCCGCAGG CCTTGCCCTG 
GGCCTCGCCG GCCCCATGCA CGCCCAGGAG CGTTTCGTCA CCATCGGCAC CGGCGGTGTC 
ACCGGGGTCT ACTACCCCAC CGGCCAGAAC ATCTGCCGGC TCATGAACCG TGACCAGGCC 
AGCCACGGCA TCCGCTGCAA CGCAGAATCC ACCGGCGGCT CGGTGTTCAA CCTGAACGCC 
ATCCGGCAGA AGGAAATGAA CCTGGGCGTG GCGCAGTCCG ACTGGCAGTA CCACGCCTAC 
CATGGCAGCG ACCGCTTCAG TGACGTGGGC CCCCACGAGT CCCTGCGCGC CGTGTTCTCC 
CTTCACCCGG AGCCCTTCAC CGTGCTGGTG CGTCCCGACA GCGGCATCAC TCGCTTCGAG 
GACATCAAGG GCAAGCGCGT CAACGTGGGC AACCCCGGCT CCGGCCAGCG GGGCACCGTG 
GAGCGCCTGA TGGAGGTCTA CGGCTGGCGC ATGTCCGACT TCGCCCTGGC CTCGGAACTG 
CCCTCCCGGG AACAGGGCCA GGCCCTGTGC GACAACCGCA TCGACGTGGT GCTGTTCACC 
GTGGGCCACC CCTCCGCGGC CATCCAGGAG CCCATCGCCA CCTGCGGCGC GCGCATCGTG 
CCGGTGGAGG GCGAGATCAT CGACACCCTG GTGAGCGAGA CCCCCTACTA TTTCCACGCC 
ACCATCCCCG CAGGCATGTA CCCGGGACAG GATGCGAACG TGCGCACCTT CGGCGTGGGC 
GCCACCCTGG TCTCTTCCAC GGACACCTCC GAGGAGGCGG TCTATCACCT GGTCAAGGCG 
GTGTTCGAGA ACTTCGACAC CTTCAAGGGC ATGCACCCGG CCTTCGGCGT GCTGGAGAAG 
GAGACCATGG TCAGCCAGGG TCTCTCCGCG CCCATGCACG AGGGTGCCCG TCGCTACTTC 
CGTGAAGCGG GCCTGCTCAG CGACTGA
 
Protein sequence
MNLSRMRRSL LTLLSAGLAL GLAGPMHAQE RFVTIGTGGV TGVYYPTGQN ICRLMNRDQA 
SHGIRCNAES TGGSVFNLNA IRQKEMNLGV AQSDWQYHAY HGSDRFSDVG PHESLRAVFS 
LHPEPFTVLV RPDSGITRFE DIKGKRVNVG NPGSGQRGTV ERLMEVYGWR MSDFALASEL 
PSREQGQALC DNRIDVVLFT VGHPSAAIQE PIATCGARIV PVEGEIIDTL VSETPYYFHA 
TIPAGMYPGQ DANVRTFGVG ATLVSSTDTS EEAVYHLVKA VFENFDTFKG MHPAFGVLEK 
ETMVSQGLSA PMHEGARRYF REAGLLSD