| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tgr7_1509 |
|---|
| Symbol | prpB |
|---|
| ID | 7317996 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thioalkalivibrio sp. HL-EbGR7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011901 |
|---|
| Strand | - |
|---|
| Start bp | 1619240 |
|---|
| End bp | 1620139 |
|---|
| Gene Length | 900 bp |
|---|
| Protein Length | 299 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 643616400 |
|---|
| Product | 2-methylisocitrate lyase |
|---|
| Protein accession | YP_002513580 |
|---|
| Protein GI | 220934681 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2513] PEP phosphonomutase and related enzymes |
|---|
| TIGRFAM ID | [TIGR02317] methylisocitrate lyase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.265222 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATCAAA GCCAGACACC GGGCGCGCGC CTGCGCCAGG CCGTGCAGGA AGAAACACCG
CTGCAGGTGA TGGGCGCCAT CAACGCCTAC CACGCCACGC TGGCCGAACA GACCGGCTAC
CGCGCCCTGT ACCTCTCCGG CGGTGGCGTG GCCGCCGGCT CCCTGGGCCT TCCGGATCTC
GGCATCAGCA CCCTGCACGA CGTGCTGGAA GACGTGCGCC GCATCACCTA CGTCACCGAG
CTGCCGCTGC TGGTGGACGC GGACACCGGC TTCGGACCCA GCGCCTTCAA CATCGCCCGC
ACGGTGCGCG AACTGATCCG TGCCGAGGCC GCCGGCTGTC ACATCGAGGA CCAGGTGCAG
GCCAAGCGCT GCGGTCACCG ACCCGGCAAG GCCATCGTCA CCAAGGGCGA GATGGCGGAC
CGCATCAAGG CCGCAGCCGA CGCCCGCGAC CGGGACTTCG TGATCATGGC GCGCACCGAC
GCCCTGGCGG TGGAAGGCAT CGATGCCGCC ATTGAGCGGG CCGTGGCCTG CGTGGAGGCC
GGCGCCGACA TGATCTTCCC TGAGGCGGTC ACGGAACTGG CGCAGTACCG GCGCTTCGTG
GAGGCCGTCG GCGTGCCGGT GCTCGCCAAC ATCACCGAGT TCGGCAAGAC GCCGCTGTTC
ACCGTCGAGG AACTGAAGTC CGCGGGCGTG TCACTGGTGC TCTACCCGCT GTCCGCCTTC
CGCGCCATGA ACCAGGCCGC GCTCAGGGTC TACGAGGCCA TCCGCCGTGA CGGTACCCAG
CAAGGGGTGA TCGACCTGAT GCAGACCCGC GACCAGCTCT ATGAACATCT GGGCTATCAC
GCCTATGAGG AAAAGCTCGA CGCACTCTAC AGCCAGGACA AGGGGAAACG CGATGAGTGA
|
|---|
| Protein sequence | MNQSQTPGAR LRQAVQEETP LQVMGAINAY HATLAEQTGY RALYLSGGGV AAGSLGLPDL
GISTLHDVLE DVRRITYVTE LPLLVDADTG FGPSAFNIAR TVRELIRAEA AGCHIEDQVQ
AKRCGHRPGK AIVTKGEMAD RIKAAADARD RDFVIMARTD ALAVEGIDAA IERAVACVEA
GADMIFPEAV TELAQYRRFV EAVGVPVLAN ITEFGKTPLF TVEELKSAGV SLVLYPLSAF
RAMNQAALRV YEAIRRDGTQ QGVIDLMQTR DQLYEHLGYH AYEEKLDALY SQDKGKRDE
|
|---|
| |