| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tgr7_1436 |
|---|
| Symbol | |
|---|
| ID | 7315145 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thioalkalivibrio sp. HL-EbGR7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011901 |
|---|
| Strand | + |
|---|
| Start bp | 1532173 |
|---|
| End bp | 1533207 |
|---|
| Gene Length | 1035 bp |
|---|
| Protein Length | 344 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 643616326 |
|---|
| Product | RNA polymerase, sigma 70 subunit, RpoD subfamily |
|---|
| Protein accession | YP_002513508 |
|---|
| Protein GI | 220934609 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
|---|
| TIGRFAM ID | [TIGR02394] RNA polymerase sigma factor RpoS
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.121871 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCGAAGC GGCGCAGGAC GGAACCCCCT GCGGGGGAGC TGGAAGACGA GATCAGGGAA
GACAAGCTCG AGGCGCCTGA TGAGCTCGGT GACGAGGATG AGGCGCTGGT CCTTGCCGAT
GAAACCGAGG ATGTGGACGA GGAAGAGGAA GACGAGGATC CCGCCACCAA GGTCTATGCC
GCTGGCGATG TCCCCAAGGG TGAACTGGAC GCCACCCGGC TGTATCTCAG CGAAATCGAA
TTCTCCCCCC TGCTGACTCC TGAAGAGGAA GTCCACTACG CGCGGCTTGC CCAGAAGGGT
GACGAGGCCG GCCGGCGCAA GATGATCGAG TGCAACCTGC GCCTGGTGGT CAAGATCGCA
CGGCGCTACA TGAATCGCGG CCTTGCCCTG CTGGACCTGA TCGAGGAGGG CAATCTGGGC
CTGATCCGCG CCGTGGAGAA GTTCGATCCC GAGCGCGGTT TCCGCTTCTC CACCTATGCC
ACCTGGTGGA TCCGCCAGAC CATCGAGCGG GCCCTGATGA ACCAGACCCG CACCATCCGC
CTGCCCATCC ACGTCATCAA GGAACTCAAC GTCTACCTGC GCACCGCGCG CAAGCTCGCC
CAGGAACTGG ACCACGAGCC CACCGCGGAG GAAGTGGCCC GGCATTTGGA CCGCCCCGTG
GGGGACGTGA AGAGAATCCT GGCCCTGTCG GAGCGGGTCA CCTCCGTGGA CCTGCCCATC
GGCAAGGACG GTGAACGTGC CCTGCTGGAC GTGATCCCCG ACGAGCAGAC CCCCGAGCCC
TCCATCCTGA TCCAGGACGA GGACGTGGTG CAGTTCGTGG ACGAGTGGCT GCAGGAGCTG
GACGAAAAAC AGCGCGAGGT GATCGTGCGC CGCTTCGGCC TGCACGGCTA CGAACGCAGC
ACCCTGGAAC AGGTGGGCGC CGAACTGGGC GTCACCCGCG AGCGGGTGCG GCAGATCCAG
ATGGATGCAT TGAAGCGCCT CAGAAAAATT CTGGAGAGCA GAGGCTTTTC GGAAGAGGCG
CTTTTGCAGG GATAG
|
|---|
| Protein sequence | MPKRRRTEPP AGELEDEIRE DKLEAPDELG DEDEALVLAD ETEDVDEEEE DEDPATKVYA
AGDVPKGELD ATRLYLSEIE FSPLLTPEEE VHYARLAQKG DEAGRRKMIE CNLRLVVKIA
RRYMNRGLAL LDLIEEGNLG LIRAVEKFDP ERGFRFSTYA TWWIRQTIER ALMNQTRTIR
LPIHVIKELN VYLRTARKLA QELDHEPTAE EVARHLDRPV GDVKRILALS ERVTSVDLPI
GKDGERALLD VIPDEQTPEP SILIQDEDVV QFVDEWLQEL DEKQREVIVR RFGLHGYERS
TLEQVGAELG VTRERVRQIQ MDALKRLRKI LESRGFSEEA LLQG
|
|---|
| |