| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tgr7_1249 |
|---|
| Symbol | |
|---|
| ID | 7317738 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thioalkalivibrio sp. HL-EbGR7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011901 |
|---|
| Strand | + |
|---|
| Start bp | 1340821 |
|---|
| End bp | 1343565 |
|---|
| Gene Length | 2745 bp |
|---|
| Protein Length | 914 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 643616137 |
|---|
| Product | Tfp pilus assembly protein FimV-like protein |
|---|
| Protein accession | YP_002513322 |
|---|
| Protein GI | 220934423 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3170] Tfp pilus assembly protein FimV |
|---|
| TIGRFAM ID | [TIGR03504] FimV C-terminal domain
[TIGR03505] FimV N-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.358578 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGCATGG CCCTCTGGGC GCTGTTACTG GTACCGGGAC TGTCACAGGC GCTGGGTCTT
GGGGAGATCG AAGTCAATTC GGCCCTCAAT CAGCCGCTCA ACGCGGAGAT CGAACTGGTC
TCGGTGCGCC CCGGCGAGAT GCAGGATCTG CAGGTCCGCG TTGCCCCGGA GGCGCTCTAC
CGCCGCCTGG GCATCGAACG TTCCGCCATC ATCACCGAAC TGCGTTTCGC CCCGACGACC
CTGCCGGACG GCCGTCACGT GATTCGCGTC ACCACCAGCA ACCCGGTGCG CGAACCCTTC
GTGAACTTCC TGGTGGAGGC CACCTGGCCC GCCGGCCGCC TGGTGCGGGA ATACACCCTG
CTGCTGGACC CGCCGGTGCT GTTCGAGCAG CGCGCCGAGC CCGCCCCCCG GGCACCGGTC
ACCGAGGCCC CGCGCGAAGC CCGGCCGACC CCTGCGCCTG CCGCTCCCCG TCCTGCTGCC
CCGGCGCCCC GTGCCACCCT CGATACCTAC CGCGTGCAGC GCGGCGACAT GCTCTGGAAC
GTGGCCCGGG ATCTGCGTCC CGATGCCAGC GTCAGCGTCG AGCAGATGAT GCTGGCCCTG
CTGCGCGCCA ATCCCGAGGC CTTCACCGAC AACAACATCA ACAACCTGCA GAGCGGCCGT
GTGCTGCGCG TGCCGGACAT GGCGGAGATC AACCGCCTGA ATCAGGCCGA AGCCCGCACT
GAAGTGGCCC GACAGAACGC CCTGTGGCAG GAATACCGCA CCCGGGTCGC CGCGGCACCC
CAGCCCCAGC TTCCCGCCCA GCCGGGCACC GAGACCGCCG TTGCGCCCCG TGCCGAGGCC
GCGCCGGCAC CGGCCGAGCA GGATGCACGG CTTGAGATAC TGGCCGCCCG CGACACCGAC
GAGGCCCGTG CCGAGGTCGC GCGTGAACTG GCGCTGGCCC GGGAAACCGC CGAGACCCGT
GGCCGCGAGG CCGAGGAACT GCGTTCCAGG GTGGCTGAAC TGGAATCCCT GCTGTCGCGT
AGCGAGCGGC TGCTGGAACT GAATAACGCC CAGATGGCCG AGCTGCAGGC CCGCCTGGAT
GAGCTCGAAG GTCGCGAACC CGCAGAGCCC GCTGAAGTGG CCGAGGCGCC CGCAGTGGTT
GCGCCCGAGG AGCCGCCGGT CGTGGCCGAG ACTGAACCGG CCCCCGCGCC TGTGGAGCCT
GCGGTAGAAG CCGAACCCGT TGTGCCTGGC GAAGCCGTGA CCCTCAGCGA GGTCGAGCGC
ATGGCCGAGA CCGCCGAGGC GCCGGCCGTC GAGGCTGCCC CGGAACCGGA GGTGGCCGCG
GCCCCCGCGC CGGCCCCGGC CCCCGCAGCG CCCGTCCAGC CCCGTCCTGC GAGCCTGGTC
GACGAGATCA TGGCCAGCCC CAACCTGATG ATGATCGCGG GTCTGGTGCT GCTGCTGGTG
CTGCTGCTCA TCTGGCTGAT GATCAAGCGT CTCGGCAAGG GCAAACGTGC GGCCGCCGCC
TCCGGCATGG CCTCACCGGC CGGCGGCCGG ACCGAACCCG CCCTGTCCGG TGGCGAGGGC
GCCCTCGCGG CGGCTGCCGC CGGCGGTGCC CTGGCCGGTG CTGCCGCCAT CGCGGCCGAT
CGCGGTGAGG CGGAAGGTCA GGAAGCCGAA CTGAGCGAAG CCGAAGAAAT GGCAGCCGCC
GGGACCGAAG AGACCGAGGC CCCTGCCGCT GGTGTCGAGA GCGAGGAGAT CATCAACGAC
GACACCATCG CCGAGGTGGA TGTCTACCTG GCCTACGGCC TGTATTCCCA GGCCGAGGAT
CTGCTCAATA AGGCCGTGCA GGAACACCCC GATCGCGTGG ATTACCGCTT CAAGCTGGCG
GAGACTCATT ACGCCAACCG TAACGTGGAG GCCTTCGAGG CCAACGCCCA GGCCATGCAC
GATACCCTGG CAGGCCGTCC GAGCCAGCTG TGGGAACGCG TGCAGTCCAT GGGGCAGGAT
CTGAACCCGG CCAATGCACT GTTCTCCGGT GCAGCCGCCA TGGATTTCGG CGGTGATGCC
GGCGCCCCCG AGGTGGATCT GGACCTGGGC GTGCAGGACC TGGAGGGTTC CCTGGAAGAC
CTGGACCTGG GCGAGGAACC GGCTGCCGAG CCGGCTGAGA CGCCGGAGAT GGAAGCCGCC
GGCGAGGTGG AGCTGGATCT GGACGTGGAC GAGAAGCCCA AGGCCTCAGC CGATGAGGCC
CTGGAATTCG ATCTGGGCGA CCTGGACCTG GGAGGAGAGG GCCTGGATAC GGAACTGCTC
GACACCACGG CGGAAACCCA GGTGGAAGAG CCCGTGGCGT CCAAGCCGCT GGACGTGTCC
GCGGAGCTTG AGGAGAGCCT GGAGATCGGT TCCCTGGACG AGGATCTCAG TGCCGGCCTC
GATGAGGAAC TCGCGGCCTC CTTCGACCTG GAAGGCGAGA CCGCGGCGGC GGAACGCCCC
GTGGGCATCG ATACCGCCGA AGACGACACC CAGATCATGG AGGAGGATTT CTCCGAGATC
GATTTCCTCG GCGAGGGTGC GGAAGGCGAT GATCTCCTGG TCACCGACGA GGAGGAGCAG
GCGCTGCCCT CCGGAGACGA GGTCAGCACC AAGCTGGATC TGGCCCGTGC CTACATCGAC
ATGGGTGATT CCGAAGGGGC GCGCAGCACT CTCGAGGAAG TCCTGACCGA AGGCAACGCC
AGCCAGAAAC AGGAGGCCCA GGGGCTGCTC GACCAGCTGT CCTGA
|
|---|
| Protein sequence | MGMALWALLL VPGLSQALGL GEIEVNSALN QPLNAEIELV SVRPGEMQDL QVRVAPEALY
RRLGIERSAI ITELRFAPTT LPDGRHVIRV TTSNPVREPF VNFLVEATWP AGRLVREYTL
LLDPPVLFEQ RAEPAPRAPV TEAPREARPT PAPAAPRPAA PAPRATLDTY RVQRGDMLWN
VARDLRPDAS VSVEQMMLAL LRANPEAFTD NNINNLQSGR VLRVPDMAEI NRLNQAEART
EVARQNALWQ EYRTRVAAAP QPQLPAQPGT ETAVAPRAEA APAPAEQDAR LEILAARDTD
EARAEVAREL ALARETAETR GREAEELRSR VAELESLLSR SERLLELNNA QMAELQARLD
ELEGREPAEP AEVAEAPAVV APEEPPVVAE TEPAPAPVEP AVEAEPVVPG EAVTLSEVER
MAETAEAPAV EAAPEPEVAA APAPAPAPAA PVQPRPASLV DEIMASPNLM MIAGLVLLLV
LLLIWLMIKR LGKGKRAAAA SGMASPAGGR TEPALSGGEG ALAAAAAGGA LAGAAAIAAD
RGEAEGQEAE LSEAEEMAAA GTEETEAPAA GVESEEIIND DTIAEVDVYL AYGLYSQAED
LLNKAVQEHP DRVDYRFKLA ETHYANRNVE AFEANAQAMH DTLAGRPSQL WERVQSMGQD
LNPANALFSG AAAMDFGGDA GAPEVDLDLG VQDLEGSLED LDLGEEPAAE PAETPEMEAA
GEVELDLDVD EKPKASADEA LEFDLGDLDL GGEGLDTELL DTTAETQVEE PVASKPLDVS
AELEESLEIG SLDEDLSAGL DEELAASFDL EGETAAAERP VGIDTAEDDT QIMEEDFSEI
DFLGEGAEGD DLLVTDEEEQ ALPSGDEVST KLDLARAYID MGDSEGARST LEEVLTEGNA
SQKQEAQGLL DQLS
|
|---|
| |