| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tgr7_1049 |
|---|
| Symbol | |
|---|
| ID | 7316627 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thioalkalivibrio sp. HL-EbGR7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011901 |
|---|
| Strand | + |
|---|
| Start bp | 1138977 |
|---|
| End bp | 1140395 |
|---|
| Gene Length | 1419 bp |
|---|
| Protein Length | 472 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 643615936 |
|---|
| Product | putative transglycosylase |
|---|
| Protein accession | YP_002513123 |
|---|
| Protein GI | 220934224 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG4623] Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00903015 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCACC TGGAACTGCT GGGATTCCTG ATCCTGGTGG CCATCACGTT GCTGTTTGCC
TTCAACAACC CCCGCAGCGC CCTGGACCGG GTGCTGGACC GGGGTGAGCT GGTGGTGGCC
ATGCGGGTGG GGCCGACCAC CTATTTTTCC GGTCCGGACG GGGTGACGGG CTTTGAGTAT
GAGCTGGCCC AGGCCTTTGC CGAGCGCCTG GGCGTGCGCC TGAGGGTGGT GGTGCCGGAT
CGCTTCGAGG AGATCCTGCC CATGGTGGAG CGTGGGCGGG TGGACCTGGC GGCGGCGGGG
ATCACGGTGA CCGAACAGCG TCGCCAGCAG GTCCGCTTCG GCCCGGCCTA CAAGGAGGTC
ACCGAGCAGC TGGTGTATCG CATGGGCAGG GAGTCACGCC CCCGGACCCT GGCGGACCTC
AACGGCCAGA CCCTGGGGGT GCTCCCGGGC AGCACCCATG CGAGCCGGCT GAGCGAGCTG
CAGTCGGAGT TCCCGGAGCT GAACTGGCAG GAAACCGCCC ACGGTGACAT CAAGAGCCTG
CTGCGGGAGG TCTGGCGCGG TGGCCTCGAG CTGGCGGTGG CGGACTCGGT GGAACTGGCC
TCCCTGCAGC GCTTCTATCC CGAATTGCGA GCGGCCTTCG ACATCTCCGA ACCCCGGTCC
CTGGCCTGGG CCCTGCCCAG GGTGCGGGAT GACAGCCTCT ACGACCAGGT GCTGGCCTTC
TTCGAGGAGA TCCGGGAGAA CGGCTGGCTG GAGCAGCTGC TGGAACGGCA TTTCGGTCAT
GTGGAGGTGC TGGACTATGT GGGTACGGTC ACCTTCGTTC AGCAGGTGGA CGAGCGGCTC
TCCGAGTACC TGGACCTGTT CAAGGAGGCT GCCGAGCTCC ATGGCATGGA CTGGCGCCTT
CTGGCGGCCA TCAGTTACCA GGAGTCCCAC TGGAACCCCC GGGCGGTCTC ACCCACCGGC
GTGCGCGGCA TGATGATGCT GACCCAGAAC ACCGCCGCTC AGCTCGGCGT GAGCAACCGC
ATGGATCCCC GGGAGAGCGT GATGGGAGGC GCGGAGTACT TCAGGCACAT GCATTCACGT
ATCCCTGACC GTATTCCCGA GCCGGATCGC ACCTGGCTGG CCCTGGCGGC CTACAACGTG
GGGCTGGGAC ACCTGGAGGA CGCCCGGCGC CTCACCGAGG GGCAGGGACG CAACCCGGAC
CGCTGGATGG ACGTGATGGC GCACCTGCCC CTGCTGGCCC AGGAAAACTG GTACCGGCGC
ACCCGCTTCG GTTACGCCCG GGGCTGGGAG CCGGTGATCT ACGTGCAGAA CATCCGCAGC
TATTACGACC TGCTGGTGTG GATGACTGAT GAGTCCGGCG GCCGTCCCCC GCCCCTGCCC
AAGATCGAAC CGCTGAACAT CCTGCCCCCG GGCCTCTGA
|
|---|
| Protein sequence | MQHLELLGFL ILVAITLLFA FNNPRSALDR VLDRGELVVA MRVGPTTYFS GPDGVTGFEY
ELAQAFAERL GVRLRVVVPD RFEEILPMVE RGRVDLAAAG ITVTEQRRQQ VRFGPAYKEV
TEQLVYRMGR ESRPRTLADL NGQTLGVLPG STHASRLSEL QSEFPELNWQ ETAHGDIKSL
LREVWRGGLE LAVADSVELA SLQRFYPELR AAFDISEPRS LAWALPRVRD DSLYDQVLAF
FEEIRENGWL EQLLERHFGH VEVLDYVGTV TFVQQVDERL SEYLDLFKEA AELHGMDWRL
LAAISYQESH WNPRAVSPTG VRGMMMLTQN TAAQLGVSNR MDPRESVMGG AEYFRHMHSR
IPDRIPEPDR TWLALAAYNV GLGHLEDARR LTEGQGRNPD RWMDVMAHLP LLAQENWYRR
TRFGYARGWE PVIYVQNIRS YYDLLVWMTD ESGGRPPPLP KIEPLNILPP GL
|
|---|
| |