Gene Tgr7_0940 details

Gene Information

• Locus tag: Tgr7_0940
• Symbol: clpX
• ID: 7314969
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thioalkalivibrio sp. HL-EbGR7
• Kingdom: Bacteria
• Replicon accession: NC_011901
• Strand: +
• Start bp: 1010888
• End bp: 1012165
• Gene Length: 1278 bp
• Protein Length: 425 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 643615823
• Product: ATP-dependent protease ATP-binding subunit ClpX
• Protein accession: YP_002513015
• Protein GI: 220934116
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG1219] ATP-dependent protease Clp, ATPase subunit
• TIGRFAM ID: [TIGR00382] endopeptidase Clp ATP-binding regulatory subunit (clpX)

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.399455
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCGACA ACAAGATGAA AGATTCCGAT AGCGGCAAGC TGCTGTACTG TTCCTTCTGC 
GGCAAGAGCC AGCACGAGGT CCGCAAGCTC ATCGCGGGTC CTTCCGTGTT CATCTGTGAT 
GAATGCGTCG AGCTCTGCAA CGACATCATC CGTGAGGAGA TGCAGGAGCA GGGCGCTGCC 
GTGGGCGACA AACTGCCCAA GCCCCACGAG ATCAAGAAGA TCCTCGACGA GTACGTGATC 
GGTCAGGATC GCGCCAAGAA GATCCTGGCC GTGGCGGTGT ACAACCACTA CAAGCGTCTC 
GAGGCCCGCA ACTCGAAGGA CGAGGTGGAA CTTGCCAAGA GCAACATCCT GCTCATCGGC 
CCCACCGGTT CCGGCAAGAC CCTGCTCGCC GAGACCCTGG CCCGTCTTCT GAACGTGCCC 
TTCACCATCG CCGACGCCAC CACGCTCACC GAGGCGGGCT ACGTGGGCGA GGACGTGGAG 
AACATCATCC AGAAGCTGCT GCAGAAGTGC GACTACGACG TGGAGAAGGC CCAGACGGGT 
ATCGTCTACA TCGACGAGAT CGACAAGATC TCCCGCAAGG CCGACAACCC CTCCATCACC 
CGTGACGTCT CCGGCGAGGG TGTGCAGCAG GCCCTGCTGA AACTGATCGA GGGCACCATC 
GCCTCGGTGC CTCCCCAGGG CGGTCGCAAG CATCCCCAGC AGGAATTCCT GCAGGTGGAC 
ACCCACAACA TCCTGTTCAT CGTCGGCGGC GCCTTCGCCG GCCTGGACAA GGTGATCCGC 
GACCGTACCG AGAAGGGTGG CATCGGCTTC TCCGCCAAGG TCAAGAGCAA GGAGGAGAAG 
GGGCCCGTCT CCAGGACCCT GTCCGGCGTG GAGCCGGAGG ACCTGATCAA GTACGGCCTG 
ATCCCCGAGT TCGTGGGCCG TCTGCCGGTG GTGGCGACAC TGGAGGAACT GGACGAGGAC 
GCCCTGATCC AGATCCTCAC CGAGCCCAAG AACGCCCTGA CCAAGCAGTA CGGCAAGCTG 
TTCGAGATGG AAGGGGTGGA TATCGAGTTC CGGGAAGACG CCCTGCGCGC GGTGGCCGCC 
AAGGCCATGG AGCGCAAGAC CGGTGCCCGG GGTCTGCGCA CCATCCTGGA GCAGGTGCTG 
TTGGACACCA TGTACGATCT GCCCTCCACG GAGAACGTCT CCAAGGTGGT GATCGACGAC 
GCGGTGATCC GGGGCGAGGC CAAGCCCTAC CTCATCTACG AGAATTCCGA CTATCAGAAG 
GCAGCCGCTT CCGACTGA 

 

Protein sequence

MSDNKMKDSD SGKLLYCSFC GKSQHEVRKL IAGPSVFICD ECVELCNDII REEMQEQGAA 
VGDKLPKPHE IKKILDEYVI GQDRAKKILA VAVYNHYKRL EARNSKDEVE LAKSNILLIG 
PTGSGKTLLA ETLARLLNVP FTIADATTLT EAGYVGEDVE NIIQKLLQKC DYDVEKAQTG 
IVYIDEIDKI SRKADNPSIT RDVSGEGVQQ ALLKLIEGTI ASVPPQGGRK HPQQEFLQVD 
THNILFIVGG AFAGLDKVIR DRTEKGGIGF SAKVKSKEEK GPVSRTLSGV EPEDLIKYGL 
IPEFVGRLPV VATLEELDED ALIQILTEPK NALTKQYGKL FEMEGVDIEF REDALRAVAA 
KAMERKTGAR GLRTILEQVL LDTMYDLPST ENVSKVVIDD AVIRGEAKPY LIYENSDYQK 
AAASD