Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tgr7_0807 |
Symbol | |
ID | 7315068 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thioalkalivibrio sp. HL-EbGR7 |
Kingdom | Bacteria |
Replicon accession | NC_011901 |
Strand | + |
Start bp | 871617 |
End bp | 874028 |
Gene Length | 2412 bp |
Protein Length | 803 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 643615686 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_002512885 |
Protein GI | 220933986 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCCTCT GGCAATGGCT GCAGGCTTCG CTGCAGCGCA AGCTCAGCGC CTCCCTGGTC CTGGTCCTGG TGCTGTCGCT GGGCCTGGCG GTGTTCGTGG GCCTGCGCCA GGTGGATCGC TTCGCCGAAG AACAGTTGCG GGCGCAGCAG AGCGACCTGC CCCTGTGGAT CAACGCGGCC TTCAGCACCC GGGTGTTCGA GCAGGACTAC GGCGCGCTGG CGGACCTGGC CTTGCGCATG GTGTCCACTG GCAAAGGCGC GGTGGTCTAC GTGCAGGTGG AGGATCTGTC CGGTCGCATC TACGCCAGCG CCGGCGCGGT GCCGGACTGG CTGCAGGCAG ATCAGGGGCC GGAGGCCGAC GTCTCCTCCA TCCATCATGC CCGCGTCCCG CTGACGCTTG GCGGCATGGA CGTGGGGCAG GTCTTCATCG GGTCGTCCCT GGAGGCGGAG GAGGCGGCCC GCTCGCGCCT GCTGATGGAT AGCCTGCTGG TGGTCCTGGT GGTGCTGCCC CTGGGGTTGC TGCTGCTGGG CACGGTCGGG CACCGCATGG TGAGGCGGGT CGCGCATCTG GCCGCGAGCG CCCGAGCCGT CAGTGCAGGC CATTACGATG TGTCGCTCCC GGCCAGGGGG CATGACGAAG TGGGCCAGCT GGCCGAGGCG TTCCGCGCCA TGGTCTCCTC GGTGCGCACC CGCGAGGTGG AGCTGACCGA GGCCCATCGC CAGGCCGAGC GTCTTACCGG GCTTGCCCGC CAGGAGCAGG GCCGGCTGCG TTCCCTGCTC TCGGCCATGA ACATCGGCGT GCTGTTCGAG ACCCATGATC ACCGGGTGGA GTACTACAAC CCCGCGTTCC AGAACATCTG GGGTATCCCC CGGGACACCA ACCTGACCGG CATGCCCACC CAGGACGTGC TGGAACTGGC GGCCCACTTC GAGTCCCGCC CTGATCACAG CTCGCGCCAC ATCCTACAGG TCCTGGACAC CCACGAATCC AGCGAACGCT TCGAGACGGA GCTCAACGAC GGGCGGCTGA TCACCCAGAT CTCCTACCCG GTGCTGGACA ACGACGGCAA CAGCCTGGGC CGCCTGTGGA TCTACGAGGA CGTCACCCAC GAGCGCCAGA CCGCCGAGCA GCTGCTCTAC CTGGCGGAGC ACGACGCCCT CACCGGCCTG TGCAACCGCC ATTGCTTCGA GCAGCGCCTG GAGAAGGCCA TGGCCTCCGC CCAGCGCCAT CATCACCGGC TCGCGCTGCT GTACTTCGAC CTGGACGAAT TCAAGGCCAT CAACGACAGC TTCGGGCATC GTGCCGGTGA CGCGGTGCTG GTGCGGGTGG CGAGCGAACT GGCCCCGGTG GTGCGCGGCG GCGACATGCT GGCGCGGGTG GGTGGCGACG AGTTCGCCCT GCTCACCCAG ATCGACTCCA TCGAGGAGGC CCGCAGCCTC GCCGCGAGGC TCTGCGGGAC CGTCGCCAAG ATCCCGTTCC GCTTCCGGGG CACCGGGGTG CGCAGCACCG CCAGCGTCGG CATCGCTGTC TATCCGGAGC ACGGCGAGAC CACCGAGGAC CTGGTCGCCC GGGCGGATAT CGCCATGTAC CAGGCCAAGG GTCTGGGCAA GAACACCTGG TCGGTGTACG ACCCGGAGCG CGACCGTTCC GAGGCAGTGG CTGAGCGCCT GAGCTGGGGC GACCGCATCC GCATGGCCCT GGAGCAGGAC CTGCTCCTGC TGCACTACCA GGGCGTCTAT GACGCGGCCA GCGGCGAGCT GGTGCACATG GAGGCCCTGG CGCGCATTCG CGACCCCCGG GACCTGGAGC GCATCCTGAT GCCCGGACAG TTCGTGCCCA TCGCGGAGAA GACCGGGCTG ATCCTCGCCC TGGACCGGCG CGTGCTGGAA CTGGGCATCG CCCAGTTGGC GGATAATCCG GACATGCCTC CCCTGGCGGT GAATATCTCG GGCCGTTCCT TTGATGATCC GGCCCTGGCC GATGCCATCC GGGAACTGAT CGCACGCCAC CGGGTGGATC CATCGCGGCT CATCATCGAG CTCACCGAAA CCGCCGCGGT CTCCGAGATC CAGGAGGCCC AGCGCTTCAT CGAGTCCATG CACCGGCTGG GCTGCAAGGT GTGCCTGGAT GACTTCGGCG CCGGCTTTTC CTCGTTCGCC TATCTCAAGT ACATCGATGT GGACATGCTC AAGATCGATG GCATGTTCGT GCGTGACCTG ACCCGCGACA GGGAGAACCA GGTGTTCGTG CGCGCCATGG TGGACGTGGC CAAGGGGCTG GGCAAACGCA CCGTGGCGGA ATTCGTCGAG GATGCCGCCA CCCTGGAGAT GCTCAATACC CTCGGCGTGG ACATGGCCCA GGGCTATCAC CTGCACCGTC CCGGGCCGCA TCTGCTGCAG AAATCCGCCT GA
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Protein sequence | MSLWQWLQAS LQRKLSASLV LVLVLSLGLA VFVGLRQVDR FAEEQLRAQQ SDLPLWINAA FSTRVFEQDY GALADLALRM VSTGKGAVVY VQVEDLSGRI YASAGAVPDW LQADQGPEAD VSSIHHARVP LTLGGMDVGQ VFIGSSLEAE EAARSRLLMD SLLVVLVVLP LGLLLLGTVG HRMVRRVAHL AASARAVSAG HYDVSLPARG HDEVGQLAEA FRAMVSSVRT REVELTEAHR QAERLTGLAR QEQGRLRSLL SAMNIGVLFE THDHRVEYYN PAFQNIWGIP RDTNLTGMPT QDVLELAAHF ESRPDHSSRH ILQVLDTHES SERFETELND GRLITQISYP VLDNDGNSLG RLWIYEDVTH ERQTAEQLLY LAEHDALTGL CNRHCFEQRL EKAMASAQRH HHRLALLYFD LDEFKAINDS FGHRAGDAVL VRVASELAPV VRGGDMLARV GGDEFALLTQ IDSIEEARSL AARLCGTVAK IPFRFRGTGV RSTASVGIAV YPEHGETTED LVARADIAMY QAKGLGKNTW SVYDPERDRS EAVAERLSWG DRIRMALEQD LLLLHYQGVY DAASGELVHM EALARIRDPR DLERILMPGQ FVPIAEKTGL ILALDRRVLE LGIAQLADNP DMPPLAVNIS GRSFDDPALA DAIRELIARH RVDPSRLIIE LTETAAVSEI QEAQRFIESM HRLGCKVCLD DFGAGFSSFA YLKYIDVDML KIDGMFVRDL TRDRENQVFV RAMVDVAKGL GKRTVAEFVE DAATLEMLNT LGVDMAQGYH LHRPGPHLLQ KSA
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