Gene Tgr7_0726 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTgr7_0726 
Symbol 
ID7318073 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThioalkalivibrio sp. HL-EbGR7 
KingdomBacteria 
Replicon accessionNC_011901 
Strand
Start bp781692 
End bp783218 
Gene Length1527 bp 
Protein Length508 aa 
Translation table11 
GC content64% 
IMG OID643615606 
ProductRNA polymerase factor sigma-54 
Protein accessionYP_002512805 
Protein GI220933906 
COG category[K] Transcription 
COG ID[COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog 
TIGRFAM ID[TIGR02395] RNA polymerase sigma-54 factor 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTTAAAC CTTCCGTCCA GCTGCGTCTC GGCCAGAGCC TCACCATGAC GCCCCAGCTG 
CAGCAGGCCA TCCGCCTGTT GCAGCTCTCC ACGCTGGAAC TCCAGACCCA GATCCAGGAA
ACCCTGGAGA CCAATCCGAT GCTGGAGGCC CTGGAGGCCG GTGAGGCAGA GGGGGAGGGT
GAATCCGCCG AGGCGGATGC CGTGGACCTG GGGACCGGCA ACGACTCGGT CACCAATCAG
GCCGAGAACA ATCGCAACGA AACCACCAAC ACCCCGGAAG ATGCCGACGA CCGCGCCCGC
GGCGAGGACA TCCCCGACGA ACTGCCCGTG GACAGCAACT GGGATGAGAT CTACGACGTA
GCCCCGCCGG GCGCCACCGG CGGTATGCCG GAATACGACG GCCGGGACAT GTTCGAGAAC
CAGAGTGGCG CCGGCGAGTC CCTCCATGAA CATCTCATGT GGCAGCTCAA TCTCACCCCC
ATGAGCCCGG AGGACCGGGT CATCGCCATG ACCCTGGTGG ACGCCATCAA CGAGGACGGC
TATCTCAGCG AATCCCTGGA GGCCATCCAG GCCAGCCTGT CCAACGACCT GGAGATCGAC
CTGCCCCTGG AGGAGATCGA GGCGGTACTG CACCTGGTGC AGCAGCTCGA CCCGGTGGGC
AGTGGCGCGC GGGATCTGTC CGAATGCCTG CTCATCCAGC TCCAGCAGAT GCCCGCCGAC
ACCCCCTGGC TGGACAAGGC CCGGGAGCTG GTGCGCTCCC ACCTGGATTG CCTGGGCGCC
CGGGACTACA AGCAGTTGCT GCGCAGCCTG CATGTCAGCG AGGCAGACCT GCAGGAGATC
ATCGGCCTGA TCCAGGGGCT CAATCCACGC CCTGGCAGCC TGGTGAGCAA CATCAACCCC
GAGTACATCG TCCCCGATGT GTTCGTGCGC AAGCATGAAG GTCGCTGGCA GGTGGAGCTG
AACCCGGACA TCGCACCGCG GCTGCGGGTC AATCCGCTCT ACGCCAGTTT CGTGCGCCGC
GCCGACACCA GCCAGGATAA TGTCTACATG CGCAACCAGC TGCAGGAGGC ACGCTGGTTC
ATCAAGAGCC TGCAAAGCCG CAACGAGACC CTGCTGCGGG TGGCCATCGC CATCGTCGAA
CAGCAGCGCG CCTTCCTGGA ACAGGGCGAA GAGGCCATGA AACCCCTGGT GCTGCGCGAT
ATTGCCGAGC AACTGGACAT GCATGAGTCC ACCATCTCCC GGGTGACCAC GCAGAAATTC
ATGCACACCC CCCGGGGCAT TTTCGAATTC AAATATTTCT TTTCAAGCCA CGTGGGCACC
GCCGACGGTG GCGAGTGCTC CGCCACGGCG ATCCGCGCCA TGATCAAGAA GCTCATCGCC
GAGGAGCCCC AGGGCAAGCC CATGAGTGAC AGCAAGATCG CCTCGATCCT GGTGGACCGG
GGCATCCATG TGGCGCGGCG CACCGTGGCC AAGTACCGTG AGGCCATGTC CATACCACCT
TCCAACGAGC GCAAGCGGCT CATCTGA
 
Protein sequence
MLKPSVQLRL GQSLTMTPQL QQAIRLLQLS TLELQTQIQE TLETNPMLEA LEAGEAEGEG 
ESAEADAVDL GTGNDSVTNQ AENNRNETTN TPEDADDRAR GEDIPDELPV DSNWDEIYDV
APPGATGGMP EYDGRDMFEN QSGAGESLHE HLMWQLNLTP MSPEDRVIAM TLVDAINEDG
YLSESLEAIQ ASLSNDLEID LPLEEIEAVL HLVQQLDPVG SGARDLSECL LIQLQQMPAD
TPWLDKAREL VRSHLDCLGA RDYKQLLRSL HVSEADLQEI IGLIQGLNPR PGSLVSNINP
EYIVPDVFVR KHEGRWQVEL NPDIAPRLRV NPLYASFVRR ADTSQDNVYM RNQLQEARWF
IKSLQSRNET LLRVAIAIVE QQRAFLEQGE EAMKPLVLRD IAEQLDMHES TISRVTTQKF
MHTPRGIFEF KYFFSSHVGT ADGGECSATA IRAMIKKLIA EEPQGKPMSD SKIASILVDR
GIHVARRTVA KYREAMSIPP SNERKRLI