Gene Tgr7_0099 details

Gene Information

• Locus tag: Tgr7_0099
• ID: 7316105
• Is gene spliced: No
• Is pseudo gene: Yes
• Organism name: Thioalkalivibrio sp. HL-EbGR7
• Kingdom: Bacteria
• Replicon accession: NC_011901
• Strand: +
• Start bp: 107474
• End bp: 110021
• Gene Length: 2548 bp
• GC content: 67%
• IMG OID: 643663951
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain
• TIGRFAM ID: [TIGR00229] PAS domain S-box; [TIGR00254] diguanylate cyclase (GGDEF) domain

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.232678
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCACCAA GCCTGAAGCC GGCCTTGTCG CTGGGCCCCT TCGCCCTGGG CCCCGCAGTG 
GCGTTGCTGA TCCTTCTGTT GATCCCCATC CTGGTGTGGC TTACGGGCGC GGAACTGCCC 
CAGGTGATTC CTGCCAGGCA CATGGTGGCC TTCCACACGG CGGTGGAGAT GTTCGCCGTG 
GCAGTGGCGA TCCTGGTGTT CGCCGTGGGC TATCACGTGC TCGACGAACA CCGCGCCTGT 
GCCTCCTTGA TGCTGGCCTG TGCCTTCCTG GCGGTGGGGC TGCTGGATTT CCTGCACCTG 
ATGACCTACC CGGGCATGCC GGACCTGGTC ACCCCCAACA CCTCCCACAA GACCCTGATC 
TTCTGGCTGG CGGCGCGCCT GGTGGCCGCC GTGGCCATCC TGCTGTATGT CATCCTGCCG 
GCCAGCAGCC ACGAGGAACG GGTGCACCGG CGCATGTTCC TGATCGGGGC CCTGGTGCTG 
GTGGCCGGTG TGGCCTACGT GGGCATCTGG CGGCCCCACT GGGTGCCGGC CCTGTTCCTG 
CCCGGCGAGG GTCTGACCAG CCTCAAGGTG TCCCTGGAGG CCCTGGTCAT CGCCCTGCAC 
GTCCTGACCC TGGGCATCAT GGCCCTGCAC CCGGAGATCC GGCGTCGCTC CGGCATGGGT 
CTGCTGGCGG GCGCCCTGGT GCTGATCATC GCCAGCGAAC TGTACTTCAT GATCTACCGG 
GAGCTCACCG ATACCCTGTT CGTCCTGGGC CACGTCTACA AGGTCATGGC CTACCTGCTG 
ATCTACCGGG GCATGTTCCT GGAGAGCGTG CACCGGCCGG TGGAACGGCT GGAGGCCGCC 
CGCCAGGTGA TCGAGGCGCG GGAACGCCGC TACCACCAGC TGGTGGACAC CGCACCGGAC 
GGCGTGGTCG TCACTGATGC GCAGGGCCGG ATCTTGCTGG CCAACCGCAA CATGGAAGCC 
ATGTTCGGCT ACCCGGCGGA GGAACTGGTG GGCAGGCCAG TGGAGTGTCT GATGCCCGAG 
CGCTACCGGG CCCGGCATGA GGCGCACCGG GATTCTATGG TGGAGAGCTG GCGACCCAGG 
GCCATGGGCA AGGTCGCGGA CCTGGTGGGC ATGCGCCGGG ACGGCAGCGA GTTCCCCCTG 
GACATCAGTC TCAACACCTT CGAGGACGAC GCCGGCAATC GCATCACTGC CTTTATTAGG 
GATATCACCG AGCGCAGGCG CCAGGAGGCG CGAATTCGGC ACCAGGCCAC CCACGATGAA 
CTGACGGGCC TGCCTAACCG CCTCTTGCTG GCCGACCGCC TGGCCCAGGC CCTGGCCCAC 
GCAGGGCGTC ATGGGACCAA GGTGGCGGTA ATGTTGCTGG ACCTGGACAA CTTCAAGCTG 
GTCAACGACA GCATGGGTCA CCTGGAGGGA GATGCGGTGT TGAAGGAAGT CGCGCGACGG 
CTCACCGAAT CGCTGCGCCG GGAAGACACC GTCGCCCGGT TCGGCGGTGA TGAATTCATC 
ATCCTGTTGT CCGACGTCGG CCGCGAGACC GATCTGGCCG CCGTGGCTGG GAATATCCTC 
AAGACCTTCG AGCGCCCCAT CCAGATCCGC GAGGGGCATG TGATCAATGC CAGCGCGAGC 
CTGGGAATCG CTCTGTATCC CGACGACGGG ACCGACGAAG AGACCCTGGT GCGCTATGCC 
GACATGGCCA TGTACGAGGC CAAGCAGAGC GGGCGCAACA CCATACGCCT TCTTCTCCGA 
GCGGCTTGAT AGCCAGGTGC ACGAGGAACA GCGTCTGGTG GAGCGACTCA AGCATGCCTT 
GGCACAGGAG CGCTTCCAGC TGCATTACCA GCCCCTGGTG GACGTGGCCA GTGGCGAGGT 
CGTCGGGGCC GAGGCCCTGC TGCGCTGGCA TGACGAGGAG CTCGGTCCGG TCTCGCCGGA 
GCGTTTTGTA CCCGCCGCCG AGGCCAACGG CCTGATCGTA CCCCTGGGCG ACTGGGTGCT 
GCGCGCGGCC TGCGAGCAGG CGGCACGTTT CGCGGCGCAG GGCCTGTCCC TGCGGGTGTC 
CATCAATCTG TCCGCCATGC AGTTCCGCCA GCAGGACCTG GTGGACAAGC TGCGCGCCGC 
CCTTAATGCC AGTGGCGCGC CGCCCGATCG CCTGGATGTG GAGGTCACCG AGACCGTGGC 
CATGGCGGAC GTGGCCCTGG CCCGCCAGCA GTTGCAAGGG CTCAAGGCCC TGGGTGTGGG 
CATCTCCCTG GACGACTTCG GCACCGGCTA TTCCTCCCTG GCCTATCTCA AGGCCCTGCC 
CATCGACCGG CTCAAGATCG ACCGTACCTT CGTGCAGGAC ATCGGCAGCG GCCATCAGGC 
AGACATGATC CTGCGCGCCA TCGTGCACCT GGGGCACAGC CTGGACCTGC GGGTGGTGGC 
CGAGGGCGTG GAGACCGAAG CGCAGCTCAG TTTCCTGGAC GGCCTGGGCT GCGATGCCTA 
CCAGGGCTGG CTCCACTCCC GCGCCATGCC GGCCAGCGAT CTGTTGGGTT TTCTGGAGAC 
CGGGCGCAGC CGGGTCAGGC AGCACTGA 

 

Protein sequence