| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_2654 |
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| Symbol | rpoB |
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| ID | 3579070 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermobifida fusca YX |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007333 |
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| Strand | - |
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| Start bp | 3120711 |
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| End bp | 3124178 |
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| Gene Length | 3468 bp |
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| Protein Length | 1155 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637686373 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_290710 |
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| Protein GI | 72163053 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.679256 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGGCAGCCT CGCGCATCGC CTCCGCTAAC GCCCTTGGTC CGAACCGCGT TTCTTTCGCT
CGCATCAAGG AACCACTTGA GGTCCCGAAC CTCCTTGCCC TGCAGACCGA GTCCTTCGAC
TGGCTGCTCG GCAACGAGAG GTGGCGTGCC CGAGTCGAAG CGGCCCGCAA AGCCGGCCGT
AAGGACATTC CGGAGCAGTC CGGCCTGGAA GAGATCTTCG AAGAGATCAG TCCGATCGAG
GACTTCTCGG GCACGATGTC GCTGTCGTTC CGCGACCATC GGTTCGAGCC TCCCAAGTAC
TCCGAAGAGG AGTGCAAGGA CAAGGACATG ACCTACTCCG CCCCGATGTT CGTGACGGCG
GAGTTCATCA ACAACGACAC GGGTGAGATC AAGAGCCAGA CGGTGTTCAT GGGCGACTTC
CCGCTCATGA CCGCCAAGGG CACGTTCATC ATCAACGGCA CCGAGCGTGT CGTCGTCTCC
CAGCTTGTCC GCTCGCCTGG CGTGTACTTC GACAGCCAGA TGGACAAGTC CTCCGACAAG
GAGCTCTACG GGTGCAAGAT CATCCCGTCC CGTGGAGCCT GGCTGGAATT CGAGATCGAC
AAGCGCGACT TCGTCGGTGT CCGTATCGAC CGCAAGCGCA AGCAGGCTGT CACCATCCTG
CTCAAGGCGC TGGGCTGGAC CACCGACCAG ATCCTGGAAC GCTTCGGCGA GTACGAGTCC
ATCCGCGCCA CCCTGGAGAA GGACCCCACT GCGGGGACCG ACGACGCGCT GCTGGACATC
TACCGCAAGC TCCGCCCGGG CGAGCCTCCC ACGAAGGAGG CCGCGCAGGC TCTGCTGGAA
AACCTGTACT TCAACCCCAA GCGCTACGAC CTCGCCAAGG TCGGCCGCTA CAAGATCAAC
AAGAAGCTGG GGTTGGAGAT CGACATCACC CAGGGGACGC TCACCGAAGA GGACATCGTC
GCCACCGTCG ACTACCTCGT CCGGCTGCAC GCCGGGGAGA AGGAGCTGGT GCGTCCGCAC
GGCACCTTCC CGATCGAGGT CGACGACATC GACCACTTCG GTAACCGCCG GCTGCGCACC
GTCGGTGAGC TCATCCAGAA CCAGGTCCGC CTGGGGCTGG CCCGCATGGA ACGGGTCGTC
CGGGAGCGCA TGACCACCCA GGACGTCGAG GCGATAACGC CGCAGACGCT GATCAACATC
CGTCCGGTCG TCGCCTCCAT CCGGGAGTTC TTCGGCACCA GCCAGCTCTC CCAGTTCATG
GACCAGACCA ACCCGCTGGC CGGCCTGACC CACAAGCGCC GCCTCTCCGC GCTGGGACCG
GGCGGTCTGT CCCGTGAGCG GGCGGGCTTC GAGGTCCGCG ACGTCCACCC GTCGCACTAC
GGCCGCATGT GCCCGATCGA GACACCGGAA GGCCCGAACA TCGGCCTCAT CGGCTCGCTT
GCGGCCTACG CCCGGGTCAA CTCCTTCGGG TTCATCGAGA CCCCCTACCG CAAGGTGGTC
GACGGCCGGA TCACCGACGA GGTGGTCTAC CTCACCGCGG ACGAAGAGGA CCGGTACGTC
ATCGCCCAGG CGAACACCCC GGTCAACCCC GACGGGACCT TCGCGGAGTC CCAGGTGCTG
GCACGCCGCA AGGGCGGGGA GTTCGAGTCC GTCGCCGCGG AAGAAGTCCA CTACATGGAC
ATCTCCCCGC GGCAGATGGT GTCGGTCGCC ACCGCCATGA TCCCGTTCCT GGAGCACGAC
GACGCCAACC GGGCGCTCAT GGGCTCCAAC ATGCAGCGTC AGGCGGTGCC ACTGCTGCGT
GCCGAGGCCC CGCTCGTGGG TACCGGTATG GAGTACCGCG CGGCCACCGA CGCCGGCGAC
GTCATCCTGG CGGAGAAGTC CGGTGTCGTC GAGGACGTCA CCGCCGACTA CATCACCGTC
CTGGCCGACG ACGGCACCCG CAAGACCTAC CGGGTCCACA AGTTCCGCCG CACCAACCAG
GGCACCTGCT TCAACCAGCG CCCCATCGTC GAAGAAGGCC AGCGGGTCGA GGAAGGCCAG
GTGCTCGCCG ACGGACCGTC CACCGAGGCC GGTGAGATGG CGCTCGGCAA GAACCTCCTC
GTGGCGTACA TGTCCTGGGA GGGCCACAAC TACGAGGACG CCATCGTGCT GTCCCAGCGC
CTGGTCGAAG AGGACATCCT CTCCTCGATC CACATCGAGG AACACGAGGT CGACGCGCGC
GAGACCAAGC TGGGCCCCGA GGAGATCACC CGCGAGATCC CCAACGTCAG CGAGGAAGTC
CTCGCCGACC TCGACGAACG CGGCATCATC CGCATCGGTG CCGAGGTCGT CGACGGTGAC
ATCCTCGTCG GTAAGGTCAC GCCCAAGGGT GAGACCGAGC TGACCCCGGA GGAGCGCCTG
CTCCGCGCGA TCTTCGGGGA GAAGGCCCGC GAGGTCCGCG ACACCTCCTT GAAGGTGCCG
CACGGTGAGT CCGGCAAGGT CATCGGTGTG CGCGTCTTCA GCCGCGAGGA AGGCGACGAG
CTTCCTCCGG GCGTGAACGA ACTGGTCCGC GTCTACGTGG CCCAGAAGCG CAAGATCACC
GATGGCGACA AGCTCGCCGG ACGGCACGGC AACAAGGGTG TCATCGCCAA GATCCTCCCC
AAGGAAGACA TGCCCTTCCT GGAGGACGGC ACCCCCGTGG ACATCGTGCT CAACCCGCTG
GGTGTGCCTG GCCGGATGAA CATCGGCCAG ATCATGGAAA TGCACCTCGG GTGGCTCGCG
AAACACGGGT GGAAAGTCGA AGGCGACGAC GCCGAATGGA AGCGCCGGCT GCGTGACATC
GGGGCACACG AGGCACCGCC CAACTCCAAG GTCGCGACGC CCGTCTTCGA CGGTGCCCGG
GAAGACGAGA TCAGCGGTCT GCTGAGCTGC GTCCTGCCCG ACCAGGACGG CGACATCCTG
GTCAACAAGT TCGGCAAGGC CAAGCTGTAC GACGGACGCA CCGGCGAACC GTTCAAGGAG
CCGGTCGCGG TCGGCTACGC CTACTTCCTG AAGCTGCACC ACCTCGTGGA CGACAAGATC
CACGCCCGGT CCACCGGCCC GTACTCGATG ATCACCCAGC AGCCGCTGGG TGGTAAGGCG
CAGTTCGGTG GACAGCGCTT CGGCGAGATG GAGGTGTGGG CGCTCGAGGC CTACGGCGCT
GCCTACGCCC TGCAAGAGCT GCTCACCATC AAGTCCGACG ACATCAACGG TCGCGTCAAG
GTCTACGAGG CCATCGTCAA GGGCGAGAAC ATCCCCGAGC CCGGCATCCC CGAGTCCTTC
AAGGTGCTCA TCAAGGAGAT GCAGTCGCTC TGCCTCAACG TGGAAGTTCT CTCCCGCGAC
GGCATGTCCA TCGAGATGCG CGACAGCGAG GAAGACGTCT TCCGTGCGGC CGAAGAACTG
GGTATCGACC TTGGTCGGCG TGAGCCGAGC AGTGTCGAAG AGGTCTGA
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| Protein sequence | MAASRIASAN ALGPNRVSFA RIKEPLEVPN LLALQTESFD WLLGNERWRA RVEAARKAGR
KDIPEQSGLE EIFEEISPIE DFSGTMSLSF RDHRFEPPKY SEEECKDKDM TYSAPMFVTA
EFINNDTGEI KSQTVFMGDF PLMTAKGTFI INGTERVVVS QLVRSPGVYF DSQMDKSSDK
ELYGCKIIPS RGAWLEFEID KRDFVGVRID RKRKQAVTIL LKALGWTTDQ ILERFGEYES
IRATLEKDPT AGTDDALLDI YRKLRPGEPP TKEAAQALLE NLYFNPKRYD LAKVGRYKIN
KKLGLEIDIT QGTLTEEDIV ATVDYLVRLH AGEKELVRPH GTFPIEVDDI DHFGNRRLRT
VGELIQNQVR LGLARMERVV RERMTTQDVE AITPQTLINI RPVVASIREF FGTSQLSQFM
DQTNPLAGLT HKRRLSALGP GGLSRERAGF EVRDVHPSHY GRMCPIETPE GPNIGLIGSL
AAYARVNSFG FIETPYRKVV DGRITDEVVY LTADEEDRYV IAQANTPVNP DGTFAESQVL
ARRKGGEFES VAAEEVHYMD ISPRQMVSVA TAMIPFLEHD DANRALMGSN MQRQAVPLLR
AEAPLVGTGM EYRAATDAGD VILAEKSGVV EDVTADYITV LADDGTRKTY RVHKFRRTNQ
GTCFNQRPIV EEGQRVEEGQ VLADGPSTEA GEMALGKNLL VAYMSWEGHN YEDAIVLSQR
LVEEDILSSI HIEEHEVDAR ETKLGPEEIT REIPNVSEEV LADLDERGII RIGAEVVDGD
ILVGKVTPKG ETELTPEERL LRAIFGEKAR EVRDTSLKVP HGESGKVIGV RVFSREEGDE
LPPGVNELVR VYVAQKRKIT DGDKLAGRHG NKGVIAKILP KEDMPFLEDG TPVDIVLNPL
GVPGRMNIGQ IMEMHLGWLA KHGWKVEGDD AEWKRRLRDI GAHEAPPNSK VATPVFDGAR
EDEISGLLSC VLPDQDGDIL VNKFGKAKLY DGRTGEPFKE PVAVGYAYFL KLHHLVDDKI
HARSTGPYSM ITQQPLGGKA QFGGQRFGEM EVWALEAYGA AYALQELLTI KSDDINGRVK
VYEAIVKGEN IPEPGIPESF KVLIKEMQSL CLNVEVLSRD GMSIEMRDSE EDVFRAAEEL
GIDLGRREPS SVEEV
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